Variant report

Variant	rs10761109
Chromosome Location	chr9:93924882-93924883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYK-5	chr9:93924780-93925613	ENSG00000235641.3
2	lnc-SYK-5	chr9:93924604-93924914	ENSG00000235641.3
3	lnc-SYK-5	chr9:93924604-93924987	ENSG00000235641.3

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1072502	0.88[AMR][1000 genomes]
rs10732402	0.88[AMR][1000 genomes]
rs10732403	0.88[AMR][1000 genomes]
rs10761106	0.88[AMR][1000 genomes]
rs10761107	0.88[AMR][1000 genomes]
rs10991798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1327356	0.88[AMR][1000 genomes]
rs1536516	0.88[AMR][1000 genomes]
rs1806339	0.88[AMR][1000 genomes]
rs1887368	0.88[AMR][1000 genomes]
rs2031733	0.88[AMR][1000 genomes]
rs2387628	0.88[AMR][1000 genomes]
rs28412258	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4111084	0.88[AMR][1000 genomes]
rs4743816	0.88[AMR][1000 genomes]
rs4743817	0.88[AMR][1000 genomes]
rs4744031	0.88[AMR][1000 genomes]
rs4744032	0.88[AMR][1000 genomes]
rs57342203	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7028982	0.88[AMR][1000 genomes]
rs7029590	0.88[AMR][1000 genomes]
rs7043704	0.88[AMR][1000 genomes]
rs7044073	0.88[AMR][1000 genomes]
rs7045279	0.88[AMR][1000 genomes]
rs751619	0.81[AMR][1000 genomes]
rs943499	0.88[AMR][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93913200-93925000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:93920200-93928000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:93920600-93930000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:93921600-93925400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr9:93922200-93925000	Weak transcription	Adipose Nuclei	Adipose
6	chr9:93922400-93925000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:93922400-93925200	Weak transcription	Right Atrium	heart
8	chr9:93922400-93926600	Weak transcription	Gastric	stomach
9	chr9:93922400-93928800	Enhancers	Fetal Muscle Leg	muscle
10	chr9:93922600-93926800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:93922600-93927600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:93922600-93928600	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:93922600-93928600	Enhancers	Fetal Thymus	thymus
14	chr9:93922600-93929000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:93923200-93925000	Weak transcription	Small Intestine	intestine
16	chr9:93923200-93925400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:93923200-93929000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:93923400-93926000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:93923400-93928000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr9:93923600-93925000	Weak transcription	Right Ventricle	heart
21	chr9:93923600-93925600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:93923600-93927800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:93923600-93927800	Enhancers	HSMM	muscle
24	chr9:93923600-93928400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:93923600-93928800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:93923600-93929600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:93923800-93925000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr9:93923800-93925200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:93923800-93925400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr9:93923800-93925800	Enhancers	NHEK	skin
31	chr9:93923800-93927000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr9:93923800-93927600	Enhancers	Primary T cells from cord blood	blood
33	chr9:93923800-93927800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr9:93923800-93928000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:93923800-93928000	Enhancers	HMEC	breast
36	chr9:93923800-93929600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr9:93924000-93925000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:93924000-93925000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr9:93924000-93925200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr9:93924000-93925200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:93924000-93925600	Enhancers	Stomach Mucosa	stomach
42	chr9:93924000-93925800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr9:93924000-93926800	Enhancers	Osteobl	bone
44	chr9:93924000-93927400	Enhancers	Primary B cells from cord blood	blood
45	chr9:93924000-93927400	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr9:93924000-93927800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:93924000-93927800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:93924000-93927800	Enhancers	Dnd41	blood
49	chr9:93924000-93927800	Enhancers	HSMMtube	muscle
50	chr9:93924000-93927800	Enhancers	NHDF-Ad	bronchial

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