Variant report

Variant	rs10761128
Chromosome Location	chr9:92858197-92858198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:91924753..91927067-chr9:92857901..92860576,2	MCF-7	breast:
2	chr9:92843844..92846787-chr9:92857417..92859315,2	MCF-7	breast:
3	chr9:92221881..92224569-chr9:92856789..92859369,3	MCF-7	breast:
4	chr9:92857591..92859341-chr9:92860040..92862686,2	MCF-7	breast:
5	chr9:92219124..92221595-chr9:92854778..92859945,4	MCF-7	breast:
6	chr9:92219255..92222737-chr9:92856647..92859942,4	MCF-7	breast:
7	chr9:92850629..92852906-chr9:92857887..92860130,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234910	Chromatin interaction
ENSG00000123975	Chromatin interaction
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10992064	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992067	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58429293	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92848800-92862200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:92855600-92864400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:92857000-92860400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr9:92857000-92861600	Enhancers	Fetal Brain Female	brain
5	chr9:92857000-92862400	Enhancers	Fetal Brain Male	brain
6	chr9:92857400-92859000	Enhancers	HSMMtube	muscle
7	chr9:92857600-92858400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:92857600-92858600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:92857600-92858600	Enhancers	Fetal Intestine Small	intestine
10	chr9:92857600-92858600	Enhancers	HSMM	muscle
11	chr9:92857600-92858800	Enhancers	Fetal Intestine Large	intestine
12	chr9:92857600-92858800	Enhancers	Stomach Mucosa	stomach
13	chr9:92857600-92859200	Bivalent Enhancer	Fetal Thymus	thymus
14	chr9:92857800-92858200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:92857800-92858200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr9:92857800-92858400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:92857800-92858400	Enhancers	Fetal Heart	heart
18	chr9:92857800-92858400	Enhancers	Pancreas	Pancrea
19	chr9:92857800-92858600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:92857800-92858800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:92857800-92859800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr9:92857800-92862800	Enhancers	Brain Germinal Matrix	brain
23	chr9:92857800-92862800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr9:92858000-92858200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr9:92858000-92858600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr9:92858000-92858600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
27	chr9:92858000-92858600	Enhancers	Psoas Muscle	Psoas
28	chr9:92858000-92858600	Enhancers	Right Atrium	heart
29	chr9:92858000-92859800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:92858000-92860400	Enhancers	Left Ventricle	heart
31	chr9:92858000-92860800	Enhancers	Right Ventricle	heart
32	chr9:92858000-92861200	Bivalent Enhancer	Fetal Muscle Leg	muscle

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