Variant report

Variant	rs10761134
Chromosome Location	chr9:94646983-94646984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94646595..94649139-chr9:94708273..94710120,2	K562	blood:
2	chr9:94633023..94637402-chr9:94642921..94647325,4	MCF-7	breast:
3	chr9:94631930..94633777-chr9:94645726..94647722,2	K562	blood:
4	chr9:94645315..94647676-chr9:94666839..94670309,3	K562	blood:
5	chr9:94640107..94642644-chr9:94644861..94647641,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10761132	0.83[EUR][1000 genomes]
rs10761133	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761135	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10820907	0.80[EUR][1000 genomes]
rs10820910	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs10820911	0.84[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10820914	0.84[CEU][hapmap]
rs10992142	0.80[EUR][1000 genomes]
rs10992149	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10992151	0.87[CEU][hapmap]
rs11789973	0.84[CEU][hapmap]
rs12551140	0.81[TSI][hapmap]
rs12555334	0.81[CEU][hapmap]
rs12683797	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs12684524	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs12684533	0.81[EUR][1000 genomes]
rs1528363	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1528364	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1534533	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2312734	0.81[TSI][hapmap]
rs4517189	0.84[CEU][hapmap]
rs4744109	0.83[CEU][hapmap]
rs4744111	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs4744112	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744113	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs4744114	0.80[JPT][hapmap]
rs62565675	0.82[EUR][1000 genomes]
rs6479377	0.83[EUR][1000 genomes]
rs6479379	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7031562	0.81[TSI][hapmap]
rs7867567	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7870049	0.87[CEU][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94627000-94650800	Weak transcription	Gastric	stomach
2	chr9:94627200-94648600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:94627600-94647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:94636600-94647200	Weak transcription	Fetal Intestine Large	intestine
5	chr9:94639800-94647400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:94643200-94650400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:94643400-94648600	Weak transcription	Pancreas	Pancrea
8	chr9:94644400-94650800	Weak transcription	Right Atrium	heart
9	chr9:94644800-94647600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:94645200-94647200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:94645400-94648600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:94645400-94648800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:94645800-94647600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:94646000-94648400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:94646000-94648800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:94646000-94649800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:94646000-94651600	Enhancers	K562	blood
18	chr9:94646000-94652600	Enhancers	Ovary	ovary
19	chr9:94646000-94654800	Enhancers	Fetal Lung	lung
20	chr9:94646200-94647600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
21	chr9:94646200-94648200	Enhancers	HepG2	liver
22	chr9:94646200-94648400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr9:94646200-94650800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:94646400-94647000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr9:94646400-94647600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
26	chr9:94646400-94648000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr9:94646400-94648000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:94646400-94648000	Enhancers	Colon Smooth Muscle	Colon
29	chr9:94646400-94648000	Enhancers	Fetal Intestine Small	intestine
30	chr9:94646400-94648400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr9:94646600-94647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:94646600-94647800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:94646600-94647800	Enhancers	Osteobl	bone
34	chr9:94646600-94648400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr9:94646600-94651000	Enhancers	Placenta	Placenta
36	chr9:94646600-94654600	Enhancers	Fetal Stomach	stomach
37	chr9:94646600-94658200	Weak transcription	Fetal Heart	heart
38	chr9:94646800-94647400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:94646800-94647400	Enhancers	NHEK	skin
40	chr9:94646800-94647600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
41	chr9:94646800-94647600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:94646800-94647600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links