Variant report

Variant	rs10761219
Chromosome Location	chr9:96127994-96127995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1931371	0.90[CEU][hapmap];0.80[JPT][hapmap]
rs3858081	0.90[CEU][hapmap]
rs4534181	0.87[CEU][hapmap]
rs4744226	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7022471	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7867386	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96124400-96128400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:96125000-96129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:96126800-96128400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:96126800-96128800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:96126800-96129200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:96126800-96130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:96127200-96128000	Enhancers	Stomach Mucosa	stomach
8	chr9:96127200-96128200	Enhancers	Lung	lung
9	chr9:96127600-96128200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:96127800-96128000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:96127800-96128600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:96127800-96128800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:96127800-96129400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:96127800-96129400	Strong transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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