Variant report

Variant	rs10761381
Chromosome Location	chr9:98104912-98104913
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10761386	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10993509	0.92[YRI][hapmap]
rs1105980	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs171417	0.83[CHB][hapmap]
rs184818	0.83[CHB][hapmap]
rs356673	0.83[CHB][hapmap]
rs356675	0.84[CHB][hapmap]
rs356678	0.83[CHB][hapmap]
rs356680	0.83[CHB][hapmap]
rs356684	0.84[CHB][hapmap]
rs356689	0.83[CHB][hapmap]
rs416792	0.84[CHB][hapmap]
rs4278213	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4647355	0.93[YRI][hapmap]
rs565293	0.83[CHB][hapmap]
rs7863286	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7872939	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3330996	chr9:98083446-98112507	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98099600-98105000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:98101000-98105000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:98103600-98105400	Enhancers	Fetal Heart	heart
4	chr9:98104200-98105600	Weak transcription	Fetal Lung	lung
5	chr9:98104600-98105000	Enhancers	Ovary	ovary
6	chr9:98104800-98105000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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