Variant report

Variant	rs10762541
Chromosome Location	chr10:53790461-53790462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10740411	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10823978	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1040754	chr10:53758289-53845925	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53779000-53790800	Weak transcription	Right Atrium	heart
2	chr10:53780200-53797800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:53781000-53792200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:53787000-53790800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:53787400-53791000	Enhancers	Fetal Lung	lung
6	chr10:53787400-53791400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:53787600-53792400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:53787800-53791000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:53788400-53790800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:53789000-53791400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:53789200-53792000	Enhancers	NHLF	lung
12	chr10:53789600-53790600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:53789600-53791000	Enhancers	HUVEC	blood vessel
14	chr10:53789800-53790600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:53789800-53790600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:53790000-53790600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:53790000-53791600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr10:53790200-53790600	Genic enhancers	H9 Cell Line	embryonic stem cell
19	chr10:53790200-53790600	Enhancers	NH-A	brain
20	chr10:53790200-53792200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:53790200-53792600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:53790400-53791400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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