Variant report

Variant	rs10764493
Chromosome Location	chr10:18727999-18728000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10734054	0.89[AMR][1000 genomes]
rs10734056	0.89[AMR][1000 genomes]
rs10741057	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10741058	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10741059	0.89[AMR][1000 genomes]
rs10741060	0.89[AMR][1000 genomes]
rs10741061	0.89[AMR][1000 genomes]
rs10764483	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10828679	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11014185	0.81[AMR][1000 genomes]
rs11014186	0.81[AMR][1000 genomes]
rs11014196	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1575836	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1926026	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2209587	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2209588	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2209589	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2209590	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4748464	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4748465	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6415973	0.84[AMR][1000 genomes]
rs6415974	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6482408	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6482409	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6482410	0.84[AMR][1000 genomes]
rs6482412	0.88[AMR][1000 genomes]
rs6482437	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7071123	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7077248	0.89[AMR][1000 genomes]
rs7095057	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7912753	0.81[AMR][1000 genomes]
rs983048	0.81[AMR][1000 genomes]
rs997264	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10764493	ARL5B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18703600-18732000	Weak transcription	Pancreas	Pancrea
2	chr10:18719000-18730000	Weak transcription	Aorta	Aorta
3	chr10:18724800-18738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:18726000-18730000	Enhancers	Fetal Heart	heart
5	chr10:18727200-18728200	Enhancers	Fetal Brain Male	brain
6	chr10:18727400-18728200	Enhancers	Brain Angular Gyrus	brain
7	chr10:18727600-18729400	Weak transcription	Left Ventricle	heart
8	chr10:18727800-18728400	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links