Variant report

Variant	rs10766322
Chromosome Location	chr11:16411303-16411304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16401457..16404421-chr11:16410484..16413920,4	K562	blood:
2	chr11:16402054..16403718-chr11:16411141..16413467,2	K562	blood:
3	chr11:16408487..16411265-chr11:16411284..16413231,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1018143	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766320	0.96[ASN][1000 genomes]
rs10766321	0.96[ASN][1000 genomes]
rs10766323	0.83[ASN][1000 genomes]
rs10832598	0.97[ASN][1000 genomes]
rs10832599	0.96[ASN][1000 genomes]
rs10832600	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832605	0.83[ASN][1000 genomes]
rs10832606	0.94[ASN][1000 genomes]
rs10832608	0.83[ASN][1000 genomes]
rs11023944	0.82[ASN][1000 genomes]
rs11023945	0.93[ASN][1000 genomes]
rs11820804	0.96[ASN][1000 genomes]
rs12277548	0.83[ASN][1000 genomes]
rs12800228	0.94[ASN][1000 genomes]
rs1503447	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1503448	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1503449	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1875717	0.90[ASN][1000 genomes]
rs1910406	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1910407	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2089050	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2134609	0.94[ASN][1000 genomes]
rs2174162	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2174163	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs297333	0.96[ASN][1000 genomes]
rs297339	0.96[ASN][1000 genomes]
rs61881798	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7121140	0.96[ASN][1000 genomes]
rs7925322	0.96[ASN][1000 genomes]
rs7929425	0.96[ASN][1000 genomes]
rs7929629	0.94[ASN][1000 genomes]
rs7932314	0.96[ASN][1000 genomes]
rs7942989	0.96[ASN][1000 genomes]
rs7945277	0.83[ASN][1000 genomes]
rs7951214	0.96[ASN][1000 genomes]
rs957476	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10766322	RP1-239B22.5	cis	Esophagus Muscularis	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16388200-16414200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:16406800-16415200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:16408000-16414400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:16409000-16412800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:16409000-16419200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:16410000-16418800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:16411000-16414200	Weak transcription	Fetal Intestine Large	intestine

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