Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10741736	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11024470	0.80[EUR][1000 genomes]
rs11024477	0.80[EUR][1000 genomes]
rs11024487	0.81[EUR][1000 genomes]
rs11024488	0.81[EUR][1000 genomes]
rs11024491	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11024492	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12360537	0.81[EUR][1000 genomes]
rs12365751	0.81[EUR][1000 genomes]
rs12417591	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12417593	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1399025	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1824018	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980096	0.81[EUR][1000 genomes]
rs2085275	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2124378	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4287320	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4756930	0.81[EUR][1000 genomes]
rs4757613	0.81[EUR][1000 genomes]
rs61882529	0.81[EUR][1000 genomes]
rs7104168	0.80[EUR][1000 genomes]
rs7104856	0.80[EUR][1000 genomes]
rs7113855	0.80[EUR][1000 genomes]
rs7118250	0.81[EUR][1000 genomes]
rs7119063	0.81[EUR][1000 genomes]
rs7129345	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs871699	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs907922	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	esv11709	chr11:18138662-18200717	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv971990	chr11:18153921-18164912	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10766457	SAAL1	Cis_1M	lymphoblastoid	RTeQTL
rs10766457	SAAL1	cis	Artery Tibial	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18150400-18156200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:18153800-18155000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:18153800-18155600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:18154200-18156800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:18154400-18155000	Enhancers	Esophagus	oesophagus
6	chr11:18154600-18155400	Enhancers	HMEC	breast
7	chr11:18154600-18155600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr11:18154600-18156000	Weak transcription	NHEK	skin

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