Variant report

Variant	rs10766504
Chromosome Location	chr11:18802340-18802341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11024792	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603403	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4075664	1.00[JPT][hapmap]
rs4237733	0.85[ASN][1000 genomes]
rs4274187	0.88[JPT][hapmap]
rs4372421	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv525452	chr11:18735947-18802503	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10766504	SERGEF	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18784000-18808000	Weak transcription	Fetal Brain Female	brain
2	chr11:18790800-18811400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:18793600-18809000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:18794600-18811800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:18795400-18804600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:18796400-18812400	Weak transcription	Right Atrium	heart
7	chr11:18800000-18802400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:18801400-18802400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:18801400-18802400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:18801400-18802400	Weak transcription	Left Ventricle	heart
11	chr11:18801600-18802400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:18801600-18802400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr11:18801800-18802400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:18801800-18802600	Enhancers	Spleen	Spleen
15	chr11:18802000-18802400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:18802000-18802600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:18802000-18802600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:18802000-18802600	Enhancers	Duodenum Mucosa	Duodenum
19	chr11:18802200-18811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links