Variant report

Variant	rs1076708
Chromosome Location	chr1:210567430-210567431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210565121..210568359-chr1:210572172..210574144,3	K562	blood:
3	chr1:210545087..210549192-chr1:210563139..210569683,17	K562	blood:
4	chr1:210566042..210569012-chr1:210569613..210571239,2	MCF-7	breast:
5	chr1:210557280..210560870-chr1:210565323..210568970,3	MCF-7	breast:
6	chr1:210565840..210568269-chr1:210585284..210587364,2	K562	blood:
7	chr1:210544272..210548756-chr1:210564899..210569569,12	MCF-7	breast:
8	chr1:210566055..210568677-chr1:210572512..210575312,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12124675	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016068	0.92[CHD][hapmap]
rs2073038	0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2143440	0.87[MEX][hapmap];0.80[EUR][1000 genomes]
rs3753229	0.94[ASN][1000 genomes]
rs3765862	0.80[EUR][1000 genomes]
rs3765874	0.88[CHB][hapmap]
rs4844523	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4844524	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7515805	0.85[CHB][hapmap]
rs7551407	0.87[CHB][hapmap];1.00[CHD][hapmap];0.87[MEX][hapmap];0.80[EUR][1000 genomes]
rs946125	0.81[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1076708	ELK4	cis	parietal	SCAN
rs1076708	SYT14	cis	parietal	SCAN
rs1076708	HHAT	cis	parietal	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210563400-210569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:210565200-210569600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:210566000-210569000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:210566200-210568200	Enhancers	HSMMtube	muscle
8	chr1:210566200-210568800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:210566200-210569000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:210566200-210569000	Enhancers	Brain Angular Gyrus	brain
11	chr1:210566200-210569000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr1:210566200-210569400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:210566200-210569400	Enhancers	HMEC	breast
14	chr1:210566400-210568200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:210566400-210568200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:210566400-210568400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:210566400-210568800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:210566400-210568800	Enhancers	Osteobl	bone
19	chr1:210566400-210569000	Enhancers	Brain Cingulate Gyrus	brain
20	chr1:210566400-210569000	Enhancers	NHDF-Ad	bronchial
21	chr1:210566400-210569200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:210566400-210569200	Enhancers	HepG2	liver
23	chr1:210566600-210567600	Enhancers	Aorta	Aorta
24	chr1:210566600-210568000	Enhancers	NHEK	skin
25	chr1:210566600-210568200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:210566600-210568200	Enhancers	Fetal Muscle Leg	muscle
27	chr1:210566600-210568200	Enhancers	NHLF	lung
28	chr1:210566600-210568400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:210566600-210568800	Enhancers	NH-A	brain
30	chr1:210566800-210567600	Weak transcription	Fetal Brain Female	brain
31	chr1:210566800-210567600	Enhancers	Fetal Heart	heart
32	chr1:210566800-210568000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:210566800-210568000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:210566800-210568000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:210566800-210568000	Enhancers	Placenta Amnion	Placenta Amnion
36	chr1:210566800-210568200	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr1:210566800-210568200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:210566800-210568200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:210566800-210586200	Weak transcription	Lung	lung
40	chr1:210567000-210567800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:210567000-210567800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr1:210567000-210569000	Enhancers	Brain Substantia Nigra	brain
43	chr1:210567200-210570000	Weak transcription	Fetal Brain Male	brain
44	chr1:210567400-210567600	Flanking Active TSS	HSMM	muscle
45	chr1:210567400-210568800	Enhancers	Brain Anterior Caudate	brain
46	chr1:210567400-210568800	Enhancers	Brain Hippocampus Middle	brain
47	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links