Variant report

Variant	rs10768209
Chromosome Location	chr11:36416178-36416179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36409984..36413042-chr11:36415048..36418342,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10768208	0.90[AMR][1000 genomes]
rs12270583	0.89[JPT][hapmap]
rs330259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs330260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7122699	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400000-36425200	Weak transcription	Fetal Kidney	kidney
2	chr11:36400000-36425600	Weak transcription	HUVEC	blood vessel
3	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:36400600-36431200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:36400800-36443600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:36401000-36420200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:36402000-36424200	Weak transcription	Left Ventricle	heart
8	chr11:36402000-36431800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:36403000-36417800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:36403000-36438200	Weak transcription	Ovary	ovary
11	chr11:36405000-36417800	Weak transcription	HMEC	breast
12	chr11:36407200-36441800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:36407400-36417600	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:36407400-36425800	Weak transcription	Small Intestine	intestine
15	chr11:36407800-36417800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:36408400-36433000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:36409400-36419600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:36409800-36430000	Weak transcription	Liver	Liver
19	chr11:36410200-36417400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:36411800-36416800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:36412000-36417400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:36412000-36417600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:36412000-36427600	Weak transcription	Placenta	Placenta
24	chr11:36412400-36416400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr11:36412400-36417000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:36412600-36416800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:36413000-36417600	Weak transcription	HSMM	muscle
28	chr11:36413000-36417800	Weak transcription	Osteobl	bone
29	chr11:36413000-36418800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:36413000-36419600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:36413000-36420000	Weak transcription	Esophagus	oesophagus
32	chr11:36413000-36420800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
34	chr11:36413200-36418800	Weak transcription	Brain Anterior Caudate	brain
35	chr11:36413200-36419600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:36413200-36441600	Weak transcription	HSMMtube	muscle
37	chr11:36413400-36430000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:36413600-36417800	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:36413800-36428400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:36414200-36417400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:36414200-36426000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:36414800-36421000	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr11:36414800-36428800	Weak transcription	Stomach Mucosa	stomach
44	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:36415000-36418400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:36415000-36429800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:36415200-36419800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:36415200-36421000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:36415400-36416200	Genic enhancers	Primary T cells fromperipheralblood	blood
50	chr11:36415400-36416200	Enhancers	Primary T helper cells fromperipheralblood	blood

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