Variant report

Variant	rs1076836
Chromosome Location	chr21:37803047-37803048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37801129..37804550-chr21:37848189..37852893,8	MCF-7	breast:
2	chr21:37756670..37758322-chr21:37802233..37804130,2	K562	blood:

Variant related genes	Relation type
ENSG00000159259	Chromatin interaction
ENSG00000159261	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11088348	1.00[JPT][hapmap]
rs2101437	0.91[MEX][hapmap]
rs218634	1.00[JPT][hapmap]
rs218639	1.00[JPT][hapmap]
rs73902527	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33578	chr21:37488312-37819627	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1064194	chr21:37782214-37819820	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37787200-37803200	Weak transcription	Esophagus	oesophagus
2	chr21:37790800-37806600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr21:37800600-37803600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr21:37800800-37806200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr21:37801000-37803400	Enhancers	Spleen	Spleen
6	chr21:37801200-37803800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr21:37801400-37804000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr21:37801600-37803400	Flanking Active TSS	Hela-S3	cervix
9	chr21:37801600-37803600	Enhancers	NHDF-Ad	bronchial
10	chr21:37801600-37803800	Enhancers	Stomach Mucosa	stomach
11	chr21:37801600-37804000	Enhancers	NHLF	lung
12	chr21:37801600-37804400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr21:37801800-37803200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr21:37801800-37803200	Active TSS	A549	lung
15	chr21:37801800-37803400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr21:37802000-37803400	Active TSS	Psoas Muscle	Psoas
17	chr21:37802000-37803600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr21:37802000-37805000	Weak transcription	Lung	lung
19	chr21:37802200-37803200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr21:37802200-37803200	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr21:37802200-37803200	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr21:37802200-37803200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
23	chr21:37802200-37803400	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr21:37802200-37803400	Bivalent Enhancer	Fetal Thymus	thymus
25	chr21:37802200-37803400	Active TSS	Stomach Smooth Muscle	stomach
26	chr21:37802400-37803200	Weak transcription	Gastric	stomach
27	chr21:37802400-37803200	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr21:37802400-37803200	Active TSS	HUVEC	blood vessel
29	chr21:37802400-37809800	Weak transcription	Pancreas	Pancrea
30	chr21:37802600-37803200	Active TSS	Placenta Amnion	Placenta Amnion
31	chr21:37802600-37803400	Flanking Active TSS	Primary hematopoietic stem cells	blood
32	chr21:37802600-37803400	Active TSS	Colonic Mucosa	Colon
33	chr21:37802600-37803400	Enhancers	Fetal Kidney	kidney
34	chr21:37802600-37803400	Flanking Active TSS	HMEC	breast
35	chr21:37802600-37803400	Flanking Active TSS	NHEK	skin
36	chr21:37802600-37804200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr21:37802800-37803200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr21:37802800-37803200	Enhancers	Primary T cells from cord blood	blood
39	chr21:37802800-37803200	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr21:37802800-37803200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr21:37802800-37803200	Active TSS	Adipose Nuclei	Adipose
42	chr21:37802800-37803400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr21:37802800-37803400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr21:37802800-37803400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr21:37802800-37803400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr21:37802800-37803400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
47	chr21:37802800-37803400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr21:37802800-37803400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr21:37802800-37803400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr21:37802800-37803400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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