Variant report

Variant	rs10768740
Chromosome Location	chr11:41808512-41808513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:41806608..41809521-chr11:41868668..41871358,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10742606	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768739	0.89[ASN][1000 genomes]
rs10768743	0.83[EUR][1000 genomes]
rs10768744	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10768746	0.83[EUR][1000 genomes]
rs10768747	0.83[EUR][1000 genomes]
rs10768748	0.82[EUR][1000 genomes]
rs10768749	0.82[EUR][1000 genomes]
rs10768750	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10768751	0.81[EUR][1000 genomes]
rs10768752	0.81[EUR][1000 genomes]
rs10768753	0.83[EUR][1000 genomes]
rs10768754	0.83[EUR][1000 genomes]
rs10768755	0.83[EUR][1000 genomes]
rs10768756	0.83[EUR][1000 genomes]
rs10768757	0.81[EUR][1000 genomes]
rs10837728	0.83[EUR][1000 genomes]
rs10837730	0.81[EUR][1000 genomes]
rs10837731	0.82[EUR][1000 genomes]
rs10837732	0.83[EUR][1000 genomes]
rs10837733	0.83[EUR][1000 genomes]
rs10837734	0.83[EUR][1000 genomes]
rs10837735	0.83[EUR][1000 genomes]
rs10837737	0.83[EUR][1000 genomes]
rs10837738	0.83[EUR][1000 genomes]
rs10837739	0.83[EUR][1000 genomes]
rs10837740	0.83[EUR][1000 genomes]
rs10837748	0.82[EUR][1000 genomes]
rs11036558	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11036563	0.83[EUR][1000 genomes]
rs11036566	0.83[EUR][1000 genomes]
rs11036567	0.83[EUR][1000 genomes]
rs1385379	0.83[EUR][1000 genomes]
rs1484952	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1484956	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1484957	0.83[EUR][1000 genomes]
rs1531174	0.83[EUR][1000 genomes]
rs1531175	0.83[EUR][1000 genomes]
rs1531176	0.83[EUR][1000 genomes]
rs1531177	0.83[EUR][1000 genomes]
rs1531931	0.83[EUR][1000 genomes]
rs1531932	0.83[EUR][1000 genomes]
rs1531933	0.83[EUR][1000 genomes]
rs1531934	0.83[EUR][1000 genomes]
rs2124664	0.83[EUR][1000 genomes]
rs2124665	0.83[EUR][1000 genomes]
rs2168534	0.83[EUR][1000 genomes]
rs2168535	0.83[EUR][1000 genomes]
rs2862305	0.83[EUR][1000 genomes]
rs2862383	0.82[EUR][1000 genomes]
rs2902239	0.83[EUR][1000 genomes]
rs4755586	0.83[EUR][1000 genomes]
rs5024633	0.82[EUR][1000 genomes]
rs530384	0.81[EUR][1000 genomes]
rs532142	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs532994	0.82[EUR][1000 genomes]
rs533243	0.82[EUR][1000 genomes]
rs534828	0.82[EUR][1000 genomes]
rs535733	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533987	chr11:41430733-42248152	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv554094	chr11:41573627-41828613	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv975327	chr11:41801397-41819725	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv554095	chr11:41804163-41818929	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv554096	chr11:41804163-41828348	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv554097	chr11:41804167-41818980	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv554098	chr11:41804167-41828348	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv554099	chr11:41805701-41818815	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv554100	chr11:41805701-41818980	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv1837243	chr11:41806690-41818875	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv1841823	chr11:41806690-41818875	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv554101	chr11:41807281-41818980	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:41807000-41809800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:41807600-41812000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:41808400-41810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:41808400-41810600	Weak transcription	HMEC	breast

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