Variant report
Variant | rs10768745 |
---|---|
Chromosome Location | chr11:41820360-41820361 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10219392 | 0.86[ASN][1000 genomes] |
rs10768743 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10768746 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10768747 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10768748 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10768749 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10768751 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs10768752 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs10768753 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10768754 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10768755 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10768756 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10768757 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs10837728 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10837730 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10837731 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs10837732 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10837733 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10837734 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10837735 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10837736 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs10837737 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10837738 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10837739 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10837740 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10837748 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs11036563 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs11036566 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs11036567 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1385379 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1484955 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1484957 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1531174 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1531175 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1531176 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1531177 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1531931 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1531932 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1531933 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1531934 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2124664 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2124665 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2168534 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2168535 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2862305 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2862383 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2902239 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs429843 | 0.88[ASN][1000 genomes] |
rs4755586 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4756671 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs5024633 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs530384 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs532994 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs533243 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs534828 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs535733 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533987 | chr11:41430733-42248152 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
2 | nsv554094 | chr11:41573627-41828613 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv554096 | chr11:41804163-41828348 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
4 | nsv554098 | chr11:41804167-41828348 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
5 | esv3453953 | chr11:41816276-41820774 | Enhancers | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
6 | nsv1035877 | chr11:41818154-41838190 | ZNF genes & repeats Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv554109 | chr11:41818261-41828348 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
8 | nsv554110 | chr11:41818261-41828613 | ZNF genes & repeats Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
9 | nsv554112 | chr11:41818266-41828613 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
10 | esv1830006 | chr11:41818266-41842341 | ZNF genes & repeats Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
11 | nsv554116 | chr11:41818360-41828348 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
12 | nsv972921 | chr11:41818848-41850913 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
13 | nsv897291 | chr11:41818859-41902777 | ZNF genes & repeats Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
14 | nsv897292 | chr11:41818859-41906525 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
15 | nsv897293 | chr11:41818859-41914936 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:41819200-41822000 | Enhancers | Fetal Intestine Small | intestine |