Variant report

Variant	rs10769669
Chromosome Location	chr11:6165019-6165020
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1038006	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10431012	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10769656	0.81[ASN][1000 genomes]
rs10769657	0.81[ASN][1000 genomes]
rs10769658	0.81[ASN][1000 genomes]
rs10769659	0.81[ASN][1000 genomes]
rs10769667	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10769668	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10839477	0.81[ASN][1000 genomes]
rs10839478	0.81[ASN][1000 genomes]
rs10839479	0.81[ASN][1000 genomes]
rs10839489	0.81[ASN][1000 genomes]
rs10839491	0.81[ASN][1000 genomes]
rs10839509	0.84[ASN][1000 genomes]
rs10839510	0.84[ASN][1000 genomes]
rs10839512	0.84[ASN][1000 genomes]
rs10839513	0.84[ASN][1000 genomes]
rs10839514	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10839515	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10839516	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11040594	0.81[ASN][1000 genomes]
rs11040648	0.81[ASN][1000 genomes]
rs11040649	0.81[ASN][1000 genomes]
rs11040650	0.81[ASN][1000 genomes]
rs11040652	0.81[ASN][1000 genomes]
rs11040653	0.81[ASN][1000 genomes]
rs11040709	0.81[ASN][1000 genomes]
rs11040713	0.81[ASN][1000 genomes]
rs11040714	0.81[ASN][1000 genomes]
rs11040715	0.81[ASN][1000 genomes]
rs11040717	0.81[ASN][1000 genomes]
rs11040718	0.81[ASN][1000 genomes]
rs11040741	0.84[ASN][1000 genomes]
rs11040750	0.84[AMR][1000 genomes]
rs11040760	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11040761	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11040764	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11511999	0.81[ASN][1000 genomes]
rs12360715	0.84[ASN][1000 genomes]
rs12807547	0.84[ASN][1000 genomes]
rs1304843	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1462982	0.81[ASN][1000 genomes]
rs1462983	0.83[ASN][1000 genomes]
rs1599689	0.81[ASN][1000 genomes]
rs1599690	0.81[ASN][1000 genomes]
rs1841821	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1961065	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1964539	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2100884	0.89[ASN][1000 genomes]
rs2344356	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34481020	0.82[ASN][1000 genomes]
rs34682998	0.81[ASN][1000 genomes]
rs34814525	0.82[ASN][1000 genomes]
rs35349232	0.82[ASN][1000 genomes]
rs35368155	0.81[ASN][1000 genomes]
rs35672374	0.81[ASN][1000 genomes]
rs35682479	0.82[ASN][1000 genomes]
rs4362124	0.81[ASN][1000 genomes]
rs4604856	0.81[ASN][1000 genomes]
rs4758077	0.81[ASN][1000 genomes]
rs4758079	0.81[ASN][1000 genomes]
rs4758080	0.81[ASN][1000 genomes]
rs4758090	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4758379	0.81[ASN][1000 genomes]
rs4758384	0.81[ASN][1000 genomes]
rs4758385	0.81[ASN][1000 genomes]
rs4758386	0.81[ASN][1000 genomes]
rs4758391	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5005636	0.82[ASN][1000 genomes]
rs5005637	0.82[ASN][1000 genomes]
rs5005638	0.82[ASN][1000 genomes]
rs5005639	0.84[ASN][1000 genomes]
rs5005640	0.82[ASN][1000 genomes]
rs5005643	0.84[ASN][1000 genomes]
rs5005644	0.84[ASN][1000 genomes]
rs6578736	0.81[ASN][1000 genomes]
rs6578737	0.81[ASN][1000 genomes]
rs7104448	0.81[ASN][1000 genomes]
rs7106139	0.81[ASN][1000 genomes]
rs7106179	0.81[ASN][1000 genomes]
rs7111479	0.81[ASN][1000 genomes]
rs7114613	0.81[ASN][1000 genomes]
rs7114866	0.81[ASN][1000 genomes]
rs7117092	0.81[ASN][1000 genomes]
rs7117349	0.81[ASN][1000 genomes]
rs7122336	0.81[ASN][1000 genomes]
rs7122340	0.81[ASN][1000 genomes]
rs7123409	0.81[ASN][1000 genomes]
rs7929888	0.81[ASN][1000 genomes]
rs7932413	0.81[ASN][1000 genomes]
rs7932884	0.81[ASN][1000 genomes]
rs7941058	0.81[ASN][1000 genomes]
rs7943059	0.81[ASN][1000 genomes]
rs7943285	0.81[ASN][1000 genomes]
rs7952121	0.81[ASN][1000 genomes]
rs7952132	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6164000-6165400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:6164600-6165400	Active TSS	H1 Cell Line	embryonic stem cell
3	chr11:6164600-6165400	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr11:6164600-6165400	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:6164600-6165400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr11:6164800-6165400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr11:6164800-6165400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr11:6164800-6165400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr11:6164800-6165400	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr11:6164800-6165400	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr11:6164800-6165400	Active TSS	HepG2	liver
12	chr11:6165000-6165400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:6165000-6165400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:6165000-6170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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