Variant report

Variant	rs10769876
Chromosome Location	chr11:8167345-8167346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10431030	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769869	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10769873	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769874	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769878	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10839976	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10839982	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10839984	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10839985	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10839988	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11041742	0.83[ASN][1000 genomes]
rs11041757	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041773	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11607166	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3750955	0.80[EUR][1000 genomes]
rs4331082	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4340037	0.81[ASN][1000 genomes]
rs4343012	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4384376	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4397840	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4497397	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7110509	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7941531	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1048537	chr11:8137353-8196203	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8132600-8172200	Weak transcription	Pancreas	Pancrea
2	chr11:8148400-8169200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:8148800-8170200	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:8149800-8179600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:8156000-8189800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:8158000-8169600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:8160800-8168000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:8160800-8188600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:8162000-8172400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:8162000-8189400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:8162400-8183200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:8166800-8167400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:8166800-8168600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:8166800-8169000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:8167000-8167400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:8167000-8169000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr11:8167000-8169200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:8167200-8167600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:8167200-8168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:8167200-8168600	Weak transcription	H9 Cell Line	embryonic stem cell

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