Variant report

Variant	rs10769982
Chromosome Location	chr11:9033786-9033787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9026840..9029249-chr11:9032131..9034982,2	MCF-7	breast:
2	chr11:9031317..9033986-chr11:9035729..9038616,2	K562	blood:
3	chr11:9033737..9035999-chr11:9038793..9040438,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10840152	0.89[AMR][1000 genomes]
rs11042155	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2195812	0.89[AMR][1000 genomes]
rs2568023	0.89[AMR][1000 genomes]
rs2568024	0.89[AMR][1000 genomes]
rs2568026	0.89[AMR][1000 genomes]
rs2568030	0.89[AMR][1000 genomes]
rs2568046	0.84[YRI][hapmap];0.87[AMR][1000 genomes]
rs2568083	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2653563	0.89[AMR][1000 genomes]
rs2653571	0.89[AMR][1000 genomes]
rs2653579	0.89[AMR][1000 genomes]
rs2653584	0.89[AMR][1000 genomes]
rs2653608	0.89[AMR][1000 genomes]
rs2742469	0.87[AMR][1000 genomes]
rs2742482	1.00[AMR][1000 genomes]
rs2742508	0.83[YRI][hapmap];0.89[AMR][1000 genomes]
rs2742518	0.89[AMR][1000 genomes]
rs6416159	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104415	0.91[YRI][hapmap];0.89[AMR][1000 genomes]
rs7119887	0.91[YRI][hapmap]
rs7395934	0.82[YRI][hapmap];0.89[AMR][1000 genomes]
rs7396427	0.88[YRI][hapmap]
rs7479205	0.92[AFR][1000 genomes]
rs7936297	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7939313	0.81[AFR][1000 genomes]
rs7950826	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9026200-9034800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:9026200-9038800	Weak transcription	Right Atrium	heart
3	chr11:9026400-9037400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:9033400-9033800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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