Variant report

Variant	rs10770011
Chromosome Location	chr11:9318105-9318106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9316943..9319199-chr11:9321655..9323938,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10840197	0.84[AFR][1000 genomes]
rs4331093	0.84[AFR][1000 genomes]
rs4384389	0.82[AFR][1000 genomes]
rs4601780	0.84[AFR][1000 genomes]
rs7927382	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
6	nsv515891	chr11:9275898-9334961	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv7669	chr11:9290376-9335028	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv32901	chr11:9311131-9328869	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
10	esv1819846	chr11:9316937-9324496	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv1824476	chr11:9316937-9324496	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv1838674	chr11:9316937-9324496	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv553456	chr11:9316937-9324496	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	esv1001197	chr11:9316963-9326487	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9287400-9319600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:9287400-9332600	Weak transcription	HMEC	breast
3	chr11:9287400-9333000	Weak transcription	Gastric	stomach
4	chr11:9287600-9319200	Weak transcription	NHLF	lung
5	chr11:9287800-9328400	Weak transcription	A549	lung
6	chr11:9287800-9333800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:9288000-9320400	Weak transcription	Fetal Kidney	kidney
8	chr11:9288200-9321200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:9288600-9323200	Weak transcription	Pancreas	Pancrea
10	chr11:9291600-9322600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:9296600-9320000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:9296600-9332600	Weak transcription	Right Ventricle	heart
13	chr11:9296600-9333000	Weak transcription	Psoas Muscle	Psoas
14	chr11:9296600-9334800	Weak transcription	Aorta	Aorta
15	chr11:9296800-9319800	Weak transcription	Brain Substantia Nigra	brain
16	chr11:9296800-9332800	Weak transcription	Brain Angular Gyrus	brain
17	chr11:9296800-9333200	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:9296800-9333200	Weak transcription	Ovary	ovary
19	chr11:9297000-9321400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:9297000-9322800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:9297200-9321000	Weak transcription	Left Ventricle	heart
22	chr11:9298200-9323800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:9299200-9320000	Weak transcription	HSMMtube	muscle
24	chr11:9301600-9321200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:9301600-9321600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:9302200-9324800	Weak transcription	Fetal Brain Male	brain
27	chr11:9302400-9320200	Weak transcription	Stomach Mucosa	stomach
28	chr11:9302600-9318200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:9302600-9318400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:9302600-9320600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:9302600-9321600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:9302600-9325200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:9302600-9332600	Weak transcription	Esophagus	oesophagus
34	chr11:9302600-9333200	Weak transcription	Spleen	Spleen
35	chr11:9302600-9333400	Weak transcription	Fetal Brain Female	brain
36	chr11:9302600-9333600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:9302600-9334600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:9302600-9334800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:9302800-9318200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:9302800-9320600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:9302800-9321600	Weak transcription	Brain Anterior Caudate	brain
42	chr11:9302800-9334600	Weak transcription	NH-A	brain
43	chr11:9303200-9318400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:9303200-9320000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:9303200-9332000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:9303200-9333000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:9303400-9320600	Weak transcription	Osteobl	bone
48	chr11:9303400-9334000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:9304400-9319400	Weak transcription	Small Intestine	intestine
50	chr11:9305800-9332800	Weak transcription	NHDF-Ad	bronchial

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