Variant report
Variant | rs10770016 |
---|---|
Chromosome Location | chr11:9343781-9343782 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
ENSG00000268403 | Chromatin interaction |
ENSG00000166478 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10743104 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10743105 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10770006 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap] |
rs10770008 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap] |
rs10770010 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap] |
rs10770013 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs10840204 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10840205 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10840207 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10840208 | 0.93[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs10840212 | 0.86[AFR][1000 genomes] |
rs10840213 | 0.81[AFR][1000 genomes] |
rs11042267 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap] |
rs11042274 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11042278 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11500788 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2133216 | 0.86[CHB][hapmap];0.87[JPT][hapmap] |
rs4325312 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4369406 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap] |
rs4570580 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4641476 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs5014247 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs6486206 | 0.82[CEU][hapmap];0.81[JPT][hapmap] |
rs6486210 | 0.84[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs6486231 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap] |
rs7112540 | 0.85[CHB][hapmap];0.81[JPT][hapmap] |
rs7114688 | 0.82[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap] |
rs7116459 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs7119300 | 0.91[YRI][hapmap] |
rs7121013 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7123342 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap] |
rs7396439 | 0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap] |
rs9888193 | 0.81[JPT][hapmap] |
rs9888229 | 0.82[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040049 | chr11:9152536-9363488 | Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
2 | nsv916534 | chr11:9188436-9516241 | Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
3 | nsv1053045 | chr11:9208881-9363488 | Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
4 | nsv540947 | chr11:9208881-9363488 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
5 | nsv1055078 | chr11:9252857-9538877 | Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 89 gene(s) | inside rSNPs | diseases |
6 | nsv508617 | chr11:9314027-9408562 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 27 gene(s) | inside rSNPs | diseases |
7 | nsv521969 | chr11:9334961-9379005 | Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:9337000-9350600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
2 | chr11:9337200-9350400 | Weak transcription | HSMMtube | muscle |
3 | chr11:9342000-9344000 | Weak transcription | A549 | lung |
4 | chr11:9342000-9345400 | Weak transcription | HepG2 | liver |