Variant report

Variant	rs10770192
Chromosome Location	chr12:122130034-122130035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:122127725..122130645-chr12:122248269..122249908,2	MCF-7	breast:
2	chr12:122124453..122127425-chr12:122127713..122130672,3	K562	blood:
3	chr12:122124832..122127542-chr12:122129875..122131876,2	MCF-7	breast:
4	chr12:122129758..122132127-chr12:122239389..122241575,2	MCF-7	breast:
5	chr12:122129486..122132177-chr12:122133485..122135304,3	K562	blood:
6	chr12:122123715..122126577-chr12:122127730..122130596,2	K562	blood:
7	chr12:122129949..122131522-chr12:122133485..122135302,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10840612	0.80[AMR][1000 genomes]
rs2458402	0.81[AMR][1000 genomes]
rs2720041	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2942370	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2954111	0.87[AMR][1000 genomes]
rs2954112	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053272	chr12:121956483-122132477	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	nsv1040169	chr12:122096825-122209555	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122121800-122149600	Weak transcription	Right Atrium	heart
2	chr12:122125400-122135200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr12:122125400-122137600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:122125400-122139200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:122125600-122135200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr12:122129200-122130200	Weak transcription	Pancreas	Pancrea
7	chr12:122129400-122131000	Weak transcription	Fetal Heart	heart
8	chr12:122129400-122133400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:122129400-122135000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:122129400-122139800	Weak transcription	A549	lung
11	chr12:122129600-122135200	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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