Variant report

Variant	rs10771621
Chromosome Location	chr12:30213641-30213642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1040272	0.89[ASN][1000 genomes]
rs1040273	0.89[ASN][1000 genomes]
rs10743690	0.89[ASN][1000 genomes]
rs10771622	0.92[ASN][1000 genomes]
rs10771628	0.89[ASN][1000 genomes]
rs10843593	0.92[ASN][1000 genomes]
rs11050623	0.81[ASN][1000 genomes]
rs11050627	0.90[ASN][1000 genomes]
rs11050629	0.89[ASN][1000 genomes]
rs11050631	0.89[ASN][1000 genomes]
rs11050632	0.89[ASN][1000 genomes]
rs11050637	0.89[ASN][1000 genomes]
rs11561211	0.89[ASN][1000 genomes]
rs12229030	0.89[ASN][1000 genomes]
rs1554430	0.89[ASN][1000 genomes]
rs1554431	0.89[ASN][1000 genomes]
rs1554432	0.89[ASN][1000 genomes]
rs16935329	0.89[ASN][1000 genomes]
rs1874800	0.89[ASN][1000 genomes]
rs1909177	0.89[ASN][1000 genomes]
rs1909178	0.89[ASN][1000 genomes]
rs1909179	0.89[ASN][1000 genomes]
rs1909180	0.89[ASN][1000 genomes]
rs2176915	0.89[ASN][1000 genomes]
rs4930878	0.89[ASN][1000 genomes]
rs4930880	0.88[ASN][1000 genomes]
rs57419668	0.89[ASN][1000 genomes]
rs7309632	0.89[ASN][1000 genomes]
rs7958643	0.89[ASN][1000 genomes]
rs7959104	0.89[ASN][1000 genomes]
rs7959152	0.89[ASN][1000 genomes]
rs7960111	0.89[ASN][1000 genomes]
rs7962142	0.92[ASN][1000 genomes]
rs7964334	0.89[ASN][1000 genomes]
rs7968310	0.92[ASN][1000 genomes]
rs7976943	0.92[ASN][1000 genomes]
rs7978148	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948495	chr12:30090771-30344772	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1042081	chr12:30147993-30344670	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv541436	chr12:30147993-30344670	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30212400-30215400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:30213600-30214000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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