Variant report

Variant	rs10771961
Chromosome Location	chr12:32648391-32648392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10506090	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10506093	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10771960	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10771962	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10844222	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10844223	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10844224	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844226	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844227	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844228	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10844229	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10844230	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844231	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844232	0.87[ASN][1000 genomes]
rs10844234	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052040	0.87[ASN][1000 genomes]
rs11052041	0.85[ASN][1000 genomes]
rs11052042	0.85[ASN][1000 genomes]
rs11052046	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052052	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11052053	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11608343	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12322132	0.94[AFR][1000 genomes]
rs12366886	0.87[ASN][1000 genomes]
rs1500875	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1500876	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17536908	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2133943	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2133944	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4105685	0.91[ASN][1000 genomes]
rs4520681	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61928965	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7308163	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73092002	0.91[ASN][1000 genomes]
rs73094103	0.91[ASN][1000 genomes]
rs7953022	0.87[ASN][1000 genomes]
rs7962342	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7964715	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7967306	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7967702	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7970857	0.87[ASN][1000 genomes]
rs7974089	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7977101	0.87[ASN][1000 genomes]
rs7980571	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1054191	chr12:32534619-32733066	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv541455	chr12:32534619-32733066	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv3342938	chr12:32551041-32716745	Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv898970	chr12:32622097-32680236	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32594600-32659000	Weak transcription	Esophagus	oesophagus
2	chr12:32621800-32654000	Weak transcription	Lung	lung
3	chr12:32625000-32655800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:32625200-32655200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:32634000-32655000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:32636800-32650800	Weak transcription	Fetal Muscle Leg	muscle
7	chr12:32639000-32655000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:32639400-32653800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr12:32639400-32653800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr12:32639400-32653800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr12:32640200-32651000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr12:32641000-32651000	Weak transcription	Fetal Intestine Small	intestine
13	chr12:32641200-32653800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr12:32643200-32650000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr12:32644000-32653800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr12:32644400-32648600	Weak transcription	Right Ventricle	heart
17	chr12:32644800-32650400	Weak transcription	Brain Substantia Nigra	brain
18	chr12:32644800-32654400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:32646000-32653800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr12:32646200-32649000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr12:32646200-32649000	Enhancers	Fetal Thymus	thymus
22	chr12:32646200-32651800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr12:32646200-32654200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr12:32646400-32649200	Enhancers	Primary B cells from peripheral blood	blood
25	chr12:32646600-32650400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr12:32646600-32650600	Weak transcription	Psoas Muscle	Psoas
27	chr12:32646600-32650600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr12:32646600-32651000	Weak transcription	Pancreas	Pancrea
29	chr12:32646600-32651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:32646600-32652600	Weak transcription	Left Ventricle	heart
31	chr12:32646600-32653800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr12:32646600-32653800	Weak transcription	Gastric	stomach
33	chr12:32646600-32654000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr12:32646800-32648600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr12:32646800-32649000	Enhancers	Primary T cells from cord blood	blood
36	chr12:32647000-32651800	Weak transcription	Fetal Intestine Large	intestine
37	chr12:32647200-32648400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:32647200-32653000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr12:32647400-32648400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr12:32647400-32648400	Genic enhancers	Monocytes-CD14+_RO01746	blood
41	chr12:32647400-32649400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr12:32647400-32651400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr12:32647600-32648400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr12:32647600-32648400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr12:32647600-32648400	Enhancers	Thymus	Thymus
46	chr12:32647600-32648800	Enhancers	Primary T cells fromperipheralblood	blood
47	chr12:32647600-32648800	Enhancers	Right Atrium	heart
48	chr12:32647600-32649000	Enhancers	Primary B cells from cord blood	blood
49	chr12:32647600-32649000	Enhancers	Dnd41	blood
50	chr12:32647800-32648600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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