Variant report

Variant	rs10772551
Chromosome Location	chr12:12455228-12455229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10160927	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10161289	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10772548	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10772549	0.91[ASN][1000 genomes]
rs10845511	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10845512	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10845513	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10845514	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10845515	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10845516	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10845517	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10845518	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7962284	0.89[ASN][1000 genomes]
rs7971892	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv832332	chr12:12344027-12484966	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv898807	chr12:12448948-12502001	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12454800-12460600	Weak transcription	HepG2	liver
2	chr12:12455000-12459400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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