Variant report

Variant	rs10774182
Chromosome Location	chr12:4004464-4004465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10774183	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916008	chr12:3513448-4004582	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv468981	chr12:3685763-4098508	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv557116	chr12:3685763-4098508	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv832313	chr12:3798728-4015939	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv430447	chr12:3857650-4008969	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv832316	chr12:3981184-4180381	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10774182	TNFRSF1A	cis	cerebellum	SCAN
rs10774182	SCNN1A	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:3995000-4006000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr12:3998200-4005600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:3998600-4005800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:4000000-4005400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:4000000-4005800	Enhancers	Primary T cells from cord blood	blood
6	chr12:4000000-4006000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr12:4000000-4006200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:4000000-4010200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:4000200-4005800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr12:4000200-4006000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr12:4000400-4004600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr12:4000400-4005400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:4000400-4005400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:4000400-4005800	Weak transcription	Fetal Muscle Leg	muscle
15	chr12:4000400-4005800	Weak transcription	HSMM	muscle
16	chr12:4000800-4005000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr12:4001000-4006000	Weak transcription	Fetal Intestine Small	intestine
18	chr12:4002000-4005000	Weak transcription	Brain Germinal Matrix	brain
19	chr12:4002000-4005000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr12:4002000-4005400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr12:4002000-4006000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr12:4002200-4004800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr12:4002200-4005000	Weak transcription	Placenta	Placenta
24	chr12:4002200-4005800	Weak transcription	Thymus	Thymus
25	chr12:4002600-4005800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr12:4003200-4005800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:4003600-4008800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:4003600-4010000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr12:4003800-4004800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr12:4003800-4007200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:4004000-4005000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr12:4004000-4005200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr12:4004000-4005600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr12:4004000-4006200	Enhancers	HSMMtube	muscle
35	chr12:4004200-4005400	Weak transcription	Fetal Thymus	thymus
36	chr12:4004400-4004800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr12:4004400-4005000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr12:4004400-4008000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links