Variant report

Variant	rs10774228
Chromosome Location	chr12:4500986-4500987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1005054	1.00[EUR][1000 genomes]
rs10735033	1.00[GIH][hapmap]
rs10744644	0.88[EUR][1000 genomes]
rs10774229	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10849052	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11063125	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11063126	0.94[EUR][1000 genomes]
rs11063223	1.00[CEU][hapmap]
rs13312787	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2011618	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2970807	0.94[EUR][1000 genomes]
rs7138225	0.88[EUR][1000 genomes]
rs7295857	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7313282	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv557123	chr12:4436632-4736569	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv898616	chr12:4490059-4564613	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4498400-4501400	Weak transcription	Left Ventricle	heart
2	chr12:4499000-4501200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr12:4499800-4501200	Weak transcription	K562	blood
4	chr12:4500000-4501400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:4500800-4501400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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