Variant report

Variant	rs10774259
Chromosome Location	chr12:4782687-4782688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:4781056..4782780-chr12:4789868..4791397,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10082907	0.99[ASN][1000 genomes]
rs10083146	0.96[ASN][1000 genomes]
rs10083152	0.96[ASN][1000 genomes]
rs1009633	0.87[ASN][1000 genomes]
rs10160902	0.89[ASN][1000 genomes]
rs1024655	0.97[ASN][1000 genomes]
rs10774256	0.86[ASN][1000 genomes]
rs10774260	0.99[ASN][1000 genomes]
rs10849125	0.82[ASN][1000 genomes]
rs17783373	0.89[ASN][1000 genomes]
rs1990310	0.96[ASN][1000 genomes]
rs2109099	0.89[ASN][1000 genomes]
rs2109100	0.87[ASN][1000 genomes]
rs2159354	0.89[ASN][1000 genomes]
rs2159355	0.89[ASN][1000 genomes]
rs2240761	0.86[ASN][1000 genomes]
rs2240762	0.86[ASN][1000 genomes]
rs2267552	0.87[ASN][1000 genomes]
rs2302244	0.87[ASN][1000 genomes]
rs35049745	0.89[ASN][1000 genomes]
rs4147689	0.85[ASN][1000 genomes]
rs4147696	0.96[ASN][1000 genomes]
rs4765779	0.89[ASN][1000 genomes]
rs4765780	0.86[ASN][1000 genomes]
rs4765781	0.88[ASN][1000 genomes]
rs4765782	0.87[ASN][1000 genomes]
rs4766272	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4766276	0.89[ASN][1000 genomes]
rs4766278	0.89[ASN][1000 genomes]
rs4766279	0.89[ASN][1000 genomes]
rs4766280	0.89[ASN][1000 genomes]
rs4766281	0.89[ASN][1000 genomes]
rs4766282	0.85[ASN][1000 genomes]
rs4766283	0.83[ASN][1000 genomes]
rs6489558	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6489560	0.96[ASN][1000 genomes]
rs7136382	0.91[ASN][1000 genomes]
rs7136583	0.95[ASN][1000 genomes]
rs7137040	0.89[ASN][1000 genomes]
rs7137660	0.89[ASN][1000 genomes]
rs7306235	0.89[ASN][1000 genomes]
rs7311475	0.89[ASN][1000 genomes]
rs7312119	0.89[ASN][1000 genomes]
rs7953170	0.84[ASN][1000 genomes]
rs7966628	0.84[ASN][1000 genomes]
rs7972019	0.89[ASN][1000 genomes]
rs7972501	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1036308	chr12:4748657-4804156	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4759000-4799400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:4762200-4783600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:4762600-4782800	Strong transcription	Adipose Nuclei	Adipose
4	chr12:4763000-4783000	Strong transcription	Duodenum Mucosa	Duodenum
5	chr12:4763400-4782800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:4763400-4782800	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr12:4763400-4782800	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:4763400-4783000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:4763400-4783000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr12:4763400-4783000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:4763400-4783000	Strong transcription	Fetal Lung	lung
12	chr12:4763400-4783000	Strong transcription	Stomach Smooth Muscle	stomach
13	chr12:4773000-4783000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:4773800-4782800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:4773800-4794800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:4774000-4783000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:4774200-4783000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:4775600-4782800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:4778800-4794400	Weak transcription	Small Intestine	intestine
20	chr12:4778800-4796000	Weak transcription	NHEK	skin
21	chr12:4779000-4792600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr12:4779000-4799000	Weak transcription	Stomach Mucosa	stomach
23	chr12:4779400-4791400	Weak transcription	Hela-S3	cervix
24	chr12:4779600-4801800	Weak transcription	K562	blood
25	chr12:4779800-4783000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
26	chr12:4779800-4783000	ZNF genes & repeats	Fetal Brain Female	brain
27	chr12:4779800-4791400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr12:4780200-4782800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr12:4780200-4792000	Weak transcription	NHLF	lung
30	chr12:4780200-4792600	Weak transcription	Fetal Brain Male	brain
31	chr12:4780200-4809200	Weak transcription	Fetal Heart	heart
32	chr12:4780400-4791000	Weak transcription	HMEC	breast
33	chr12:4780400-4791400	Weak transcription	HSMMtube	muscle
34	chr12:4780400-4792600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr12:4780600-4791400	Weak transcription	Primary B cells from cord blood	blood
36	chr12:4780600-4799000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr12:4780800-4788800	Weak transcription	HepG2	liver
38	chr12:4781000-4782800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr12:4781200-4788800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr12:4781200-4789000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr12:4781200-4791000	Weak transcription	GM12878-XiMat	blood
42	chr12:4781200-4791400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr12:4781200-4791400	Weak transcription	Brain Angular Gyrus	brain
44	chr12:4781200-4791400	Weak transcription	HSMM	muscle
45	chr12:4781200-4791400	Weak transcription	Osteobl	bone
46	chr12:4781200-4792400	Weak transcription	A549	lung
47	chr12:4781200-4794800	Weak transcription	NH-A	brain
48	chr12:4781400-4783600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr12:4781400-4789000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr12:4781400-4791000	Weak transcription	NHDF-Ad	bronchial

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