Variant report

Variant	rs10774539
Chromosome Location	chr12:120491980-120491981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10732609	0.84[EUR][1000 genomes]
rs10774540	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3852585	0.93[EUR][1000 genomes]
rs3852587	0.86[EUR][1000 genomes]
rs3936255	0.85[EUR][1000 genomes]
rs5028648	0.96[EUR][1000 genomes]
rs73410812	0.81[AFR][1000 genomes]
rs7961547	0.80[EUR][1000 genomes]
rs7974498	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3525916	chr12:120345352-120665045	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	esv3525917	chr12:120345352-120665045	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
3	nsv899554	chr12:120389613-120513625	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120480000-120499200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr12:120480000-120499200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr12:120481600-120492200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:120486400-120498600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:120486600-120498600	Weak transcription	Gastric	stomach
6	chr12:120486600-120499200	Weak transcription	Thymus	Thymus
7	chr12:120486800-120512000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:120487000-120499400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:120487000-120502400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr12:120487000-120502400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:120487200-120499400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr12:120487200-120499800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr12:120487400-120498200	Weak transcription	Primary T cells from cord blood	blood
14	chr12:120487800-120512200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr12:120488000-120498000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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