Variant report

Variant	rs10774891
Chromosome Location	chr12:117361948-117361949
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117356635..117358381-chr12:117361006..117362660,2	K562	blood:
2	chr12:117354745..117356428-chr12:117360778..117362447,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10507277	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10732611	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10735099	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10735102	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs10735103	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs10774892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10774896	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10850731	0.86[JPT][hapmap]
rs10850743	0.86[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs10850744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11068247	0.83[JPT][hapmap]
rs11068258	0.86[JPT][hapmap]
rs11068262	0.86[JPT][hapmap]
rs11068264	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs11068277	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs11068280	0.91[JPT][hapmap]
rs11068282	0.83[JPT][hapmap]
rs11068286	0.83[JPT][hapmap]
rs11068296	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12299065	0.85[CEU][hapmap]
rs17583145	0.84[JPT][hapmap]
rs17616662	0.86[JPT][hapmap]
rs2242469	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2393110	0.92[YRI][hapmap]
rs2393111	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs3803089	0.86[JPT][hapmap]
rs3893370	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4074147	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4076700	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4077519	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4130296	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4238051	0.85[CEU][hapmap]
rs4347476	0.86[JPT][hapmap]
rs4522274	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4542506	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4562925	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs4562927	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs4766815	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4766818	0.96[YRI][hapmap]
rs4766820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4766821	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs4766822	0.87[JPT][hapmap]
rs4767474	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4767476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs4767478	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4767482	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs4767483	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4767484	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4767488	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs4767489	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4767490	0.85[CEU][hapmap]
rs4767491	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4767493	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6490102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7131746	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7133066	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7136629	0.86[JPT][hapmap]
rs7137006	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7137752	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7297848	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs7298447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap]
rs7302025	0.85[CEU][hapmap]
rs7303882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7308498	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7311972	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs7316144	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7487081	1.00[JPT][hapmap]
rs7959666	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7973240	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9804817	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1046811	chr12:117353904-117396230	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
3	esv1798657	chr12:117354067-117392259	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117349600-117363600	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117349600-117364000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117349600-117365800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:117349800-117362200	Weak transcription	Thymus	Thymus
5	chr12:117349800-117362400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:117349800-117363600	Weak transcription	Brain Substantia Nigra	brain
7	chr12:117349800-117363800	Weak transcription	Aorta	Aorta
8	chr12:117349800-117364000	Weak transcription	Adipose Nuclei	Adipose
9	chr12:117349800-117366000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:117349800-117366000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:117349800-117366000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:117349800-117371000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr12:117350000-117363000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr12:117350000-117363800	Weak transcription	Brain Hippocampus Middle	brain
15	chr12:117350000-117365400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr12:117350000-117366000	Weak transcription	Fetal Lung	lung
17	chr12:117350200-117362200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr12:117350200-117366000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr12:117350200-117366000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr12:117350200-117366800	Weak transcription	Spleen	Spleen
21	chr12:117350200-117367800	Weak transcription	Brain Germinal Matrix	brain
22	chr12:117350200-117371000	Weak transcription	Right Ventricle	heart
23	chr12:117350600-117370600	Weak transcription	Fetal Brain Male	brain
24	chr12:117351200-117363800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr12:117352400-117364200	Weak transcription	Fetal Stomach	stomach
26	chr12:117354400-117362400	Weak transcription	Colon Smooth Muscle	Colon
27	chr12:117354600-117362800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:117354800-117362400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr12:117354800-117362600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr12:117354800-117363000	Weak transcription	Left Ventricle	heart
31	chr12:117354800-117383200	Weak transcription	Esophagus	oesophagus
32	chr12:117355000-117362000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr12:117355000-117362000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr12:117355000-117362000	Weak transcription	NH-A	brain
35	chr12:117355000-117362200	Weak transcription	HSMM	muscle
36	chr12:117355000-117362200	Weak transcription	NHLF	lung
37	chr12:117355000-117363000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr12:117355400-117362400	Weak transcription	Hela-S3	cervix
39	chr12:117355400-117362400	Weak transcription	HSMMtube	muscle
40	chr12:117355600-117362800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr12:117355600-117363000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr12:117355600-117365400	Weak transcription	Lung	lung
43	chr12:117356600-117362200	Enhancers	Primary T cells from cord blood	blood
44	chr12:117356600-117364000	Weak transcription	Ovary	ovary
45	chr12:117357000-117362400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr12:117357000-117365800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr12:117357200-117362400	Weak transcription	Gastric	stomach
48	chr12:117357200-117364400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr12:117357200-117365400	Weak transcription	Placenta	Placenta
50	chr12:117357200-117365600	Weak transcription	Rectal Mucosa Donor 29	rectum

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