Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52594481..52597442-chr15:52597861..52600485,2	K562	blood:
2	chr15:52589027..52591995-chr15:52593417..52596143,3	K562	blood:

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12908325	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16964864	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34926268	0.87[ASN][1000 genomes]
rs7171094	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7181109	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52588000-52598200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:52588200-52595200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52588200-52595600	Weak transcription	Ovary	ovary
4	chr15:52588200-52602200	Weak transcription	HSMM	muscle
5	chr15:52588400-52598400	Weak transcription	HMEC	breast
6	chr15:52588400-52602800	Weak transcription	Aorta	Aorta
7	chr15:52589000-52598400	Weak transcription	A549	lung
8	chr15:52591000-52601000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:52591200-52595800	Weak transcription	NHDF-Ad	bronchial
10	chr15:52591200-52598200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:52591200-52602400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:52591400-52595200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:52591400-52598200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:52592800-52597800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr15:52593000-52595400	Enhancers	HepG2	liver
16	chr15:52593400-52598400	Weak transcription	Osteobl	bone
17	chr15:52593600-52608600	Weak transcription	Fetal Brain Male	brain
18	chr15:52593800-52595000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:52594000-52595400	Enhancers	Fetal Lung	lung
20	chr15:52594400-52601200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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