Variant report

Variant	rs10776634
Chromosome Location	chr10:49915656-49915657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10776635	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776636	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776637	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10776638	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857621	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10857622	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10857623	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10857624	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11101431	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101437	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1871610	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2377626	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2889687	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7067842	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7100075	0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs7100103	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr10:49907400-49917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
4	chr10:49910800-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:49912200-49916400	Enhancers	Fetal Heart	heart
8	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:49913200-49915800	Weak transcription	Fetal Lung	lung
10	chr10:49913200-49915800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:49913200-49916400	Weak transcription	Lung	lung
12	chr10:49913400-49916200	Genic enhancers	Primary B cells from cord blood	blood
13	chr10:49913400-49916200	Weak transcription	Placenta	Placenta
14	chr10:49914000-49916200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:49914200-49922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:49914800-49917000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr10:49915200-49915800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr10:49915200-49916200	Enhancers	Right Ventricle	heart
19	chr10:49915200-49916600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:49915200-49916800	Enhancers	Aorta	Aorta
21	chr10:49915200-49916800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr10:49915200-49917200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr10:49915400-49915800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:49915400-49915800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr10:49915400-49916200	Enhancers	Left Ventricle	heart
26	chr10:49915400-49916600	Enhancers	Brain Cingulate Gyrus	brain
27	chr10:49915400-49916800	Enhancers	Right Atrium	heart
28	chr10:49915400-49918800	Enhancers	Fetal Muscle Leg	muscle
29	chr10:49915400-49921600	Strong transcription	GM12878-XiMat	blood
30	chr10:49915600-49916600	Enhancers	Adipose Nuclei	Adipose
31	chr10:49915600-49916600	Enhancers	Stomach Smooth Muscle	stomach
32	chr10:49915600-49916800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:49915600-49916800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links