Variant report

Variant	rs10777031
Chromosome Location	chr12:87736910-87736911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10735256	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10735258	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10745442	0.89[EUR][1000 genomes]
rs10777032	0.89[EUR][1000 genomes]
rs10777033	0.86[AMR][1000 genomes]
rs10777034	0.89[EUR][1000 genomes]
rs10777040	0.82[EUR][1000 genomes]
rs10777042	0.89[EUR][1000 genomes]
rs10858592	0.89[EUR][1000 genomes]
rs11104443	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2406753	0.89[EUR][1000 genomes]
rs2897518	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4147490	0.89[EUR][1000 genomes]
rs4254148	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4269999	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4300469	0.89[EUR][1000 genomes]
rs4326883	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4338623	0.89[EUR][1000 genomes]
rs4402386	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4466916	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4561282	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4564410	0.89[EUR][1000 genomes]
rs4597138	0.89[EUR][1000 genomes]
rs4842570	0.89[EUR][1000 genomes]
rs5005936	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6538078	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6538079	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6538082	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6538083	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6538087	0.89[EUR][1000 genomes]
rs6538088	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7305305	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7310810	0.89[EUR][1000 genomes]
rs7962840	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7970729	0.89[EUR][1000 genomes]
rs7970832	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7974679	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87731200-87741200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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