Variant report

Variant	rs10778326
Chromosome Location	chr12:104776257-104776258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104681179..104682705-chr12:104774317..104776697,2	K562	blood:
2	chr12:104775473..104776325-chr12:105270608..105271497,4	MCF-7	breast:
3	chr12:104775264..104776293-chr12:105218866..105219841,5	MCF-7	breast:
4	chr12:104775827..104776339-chr12:105073605..105074446,2	MCF-7	breast:
5	chr12:104775747..104776264-chr12:105446543..105447108,2	K562	blood:
6	chr12:104770811..104773489-chr12:104774057..104776555,2	K562	blood:

Variant related genes	Relation type
ENSG00000198431	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104766000-104778200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:104771800-104781000	Weak transcription	Aorta	Aorta
3	chr12:104775200-104776400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:104775200-104776400	Enhancers	A549	lung
5	chr12:104775400-104776400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr12:104775400-104776400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:104775400-104776400	Enhancers	Fetal Muscle Leg	muscle
8	chr12:104775400-104776400	Enhancers	Dnd41	blood
9	chr12:104775400-104776400	Enhancers	K562	blood
10	chr12:104775600-104776400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:104775600-104776400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr12:104775600-104776400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr12:104775600-104776400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:104775600-104776400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:104775600-104776400	Enhancers	Esophagus	oesophagus
16	chr12:104775600-104776400	Enhancers	Fetal Brain Female	brain
17	chr12:104775600-104776400	Enhancers	Placenta	Placenta
18	chr12:104775600-104776400	Enhancers	Fetal Thymus	thymus
19	chr12:104775600-104776400	Enhancers	Lung	lung
20	chr12:104775600-104776400	Enhancers	Ovary	ovary
21	chr12:104775600-104776400	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr12:104775600-104776400	Enhancers	Thymus	Thymus
23	chr12:104775600-104776400	Enhancers	Spleen	Spleen
24	chr12:104775800-104776400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr12:104775800-104776400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:104775800-104776400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr12:104775800-104776400	Enhancers	Primary B cells from peripheral blood	blood
28	chr12:104775800-104776400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr12:104775800-104776400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr12:104775800-104776400	Enhancers	Fetal Brain Male	brain
31	chr12:104775800-104776400	Enhancers	Fetal Heart	heart
32	chr12:104775800-104776400	Enhancers	Fetal Stomach	stomach
33	chr12:104775800-104781000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr12:104776000-104776400	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr12:104776000-104776400	Enhancers	Brain Hippocampus Middle	brain
36	chr12:104776000-104776400	Enhancers	Placenta Amnion	Placenta Amnion
37	chr12:104776000-104776400	Enhancers	Osteobl	bone
38	chr12:104776000-104779200	Weak transcription	NHEK	skin
39	chr12:104776200-104776400	Enhancers	Primary T cells fromperipheralblood	blood
40	chr12:104776200-104779200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr12:104776200-104779400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr12:104776200-104781000	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links