Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10746031	0.83[ASN][1000 genomes]
rs10746032	0.86[ASN][1000 genomes]
rs10746033	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10778399	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10778400	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10778401	0.88[ASN][1000 genomes]
rs10778404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861425	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861427	0.94[ASN][1000 genomes]
rs10861428	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11112529	0.92[ASN][1000 genomes]
rs1344779	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1821231	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2060203	0.95[ASN][1000 genomes]
rs2103230	0.96[ASN][1000 genomes]
rs4964136	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4964139	0.85[ASN][1000 genomes]
rs4964373	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4964376	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7311949	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7980357	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs934415	0.96[ASN][1000 genomes]
rs934416	0.96[ASN][1000 genomes]
rs9788109	0.89[ASN][1000 genomes]
rs9788271	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105840400-105848600	Weak transcription	NHEK	skin
2	chr12:105840600-105848400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105841600-105850400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:105844400-105847400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:105845400-105848400	Weak transcription	HUVEC	blood vessel
6	chr12:105845800-105847200	Weak transcription	NH-A	brain
7	chr12:105845800-105850600	Weak transcription	HSMM	muscle
8	chr12:105845800-105850800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr12:105845800-105850800	Weak transcription	HSMMtube	muscle
10	chr12:105846000-105850600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:105846800-105847600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:105847000-105850800	Weak transcription	Aorta	Aorta

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