Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10444532	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10778469	0.84[AMR][1000 genomes]
rs10778473	0.83[AMR][1000 genomes]
rs10778474	0.83[AMR][1000 genomes]
rs10778476	0.86[AMR][1000 genomes]
rs10861608	0.82[AMR][1000 genomes]
rs10861614	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11113009	0.86[AMR][1000 genomes]
rs11113011	0.97[ASN][1000 genomes]
rs11113024	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12423068	0.84[AMR][1000 genomes]
rs12425459	0.86[AMR][1000 genomes]
rs17221107	0.86[ASN][1000 genomes]
rs2288268	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28475238	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2900499	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2900500	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4522273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4625578	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55678155	0.81[AMR][1000 genomes]
rs61941920	0.85[AMR][1000 genomes]
rs61941944	0.84[AMR][1000 genomes]
rs7296090	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7307711	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7309020	0.83[AMR][1000 genomes]
rs7971581	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435035	chr12:106765277-107015325	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832510	chr12:106787730-106951140	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106886200-106916400	Weak transcription	A549	lung
2	chr12:106894400-106916400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:106896400-106916800	Weak transcription	Fetal Intestine Small	intestine
4	chr12:106898600-106916000	Weak transcription	HepG2	liver
5	chr12:106913000-106914600	Enhancers	Fetal Stomach	stomach

Quick Search: