Variant report

Variant	rs10779439
Chromosome Location	chr1:221687103-221687104
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10495164	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118738	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118740	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024036	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12030169	0.88[ASN][1000 genomes]
rs12039408	0.87[ASN][1000 genomes]
rs12041783	0.90[ASN][1000 genomes]
rs1342091	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010123	0.90[ASN][1000 genomes]
rs17010241	0.87[ASN][1000 genomes]
rs1903138	0.90[ASN][1000 genomes]
rs1903139	0.90[ASN][1000 genomes]
rs9662212	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221686400-221688000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221686600-221688000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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