Variant report

Variant	rs10779453
Chromosome Location	chr1:221842669-221842670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10779452	0.80[ASN][1000 genomes]
rs11118820	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12406067	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12740627	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1949507	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4356058	0.82[AMR][1000 genomes]
rs4504898	0.82[AMR][1000 genomes]
rs4598493	0.81[AMR][1000 genomes]
rs6661629	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6701049	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7355123	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7523649	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221841200-221843600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:221841400-221843000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:221841400-221843000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:221841400-221843000	Weak transcription	Osteobl	bone
5	chr1:221841600-221842800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:221841600-221843000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:221841600-221843000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:221841600-221843000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:221841600-221844800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:221841600-221848400	Weak transcription	Stomach Mucosa	stomach
11	chr1:221842000-221844600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:221842200-221846000	Enhancers	HMEC	breast
13	chr1:221842600-221843200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:221842600-221843600	Enhancers	GM12878-XiMat	blood
15	chr1:221842600-221845800	Enhancers	NHDF-Ad	bronchial
16	chr1:221842600-221846200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:221842600-221846800	Enhancers	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links