Variant report

Variant	rs10779461
Chromosome Location	chr1:222051294-222051295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:222047894..222050064-chr1:222050661..222052612,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10495181	0.84[AMR][1000 genomes]
rs11118876	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11118878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11118879	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11583667	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11586814	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12027640	0.88[AMR][1000 genomes]
rs12562188	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12566801	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12567671	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12568711	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34224972	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6604679	0.89[ASN][1000 genomes]
rs6604680	0.89[ASN][1000 genomes]
rs6604682	0.97[ASN][1000 genomes]
rs7339876	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222043200-222052800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:222043400-222051400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:222043400-222052600	Weak transcription	HSMMtube	muscle
4	chr1:222047800-222054600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:222048000-222051400	Weak transcription	HMEC	breast
6	chr1:222048200-222051400	Weak transcription	Osteobl	bone
7	chr1:222048200-222052000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:222048200-222052400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:222048400-222051400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:222048400-222051600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:222048600-222051400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:222048600-222051400	Weak transcription	HSMM	muscle
13	chr1:222048600-222051400	Weak transcription	NH-A	brain
14	chr1:222048600-222051800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:222048600-222051800	Weak transcription	NHLF	lung
16	chr1:222048600-222073600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:222048800-222060800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:222049800-222052800	Enhancers	Primary hematopoietic stem cells	blood
19	chr1:222050000-222052600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:222050200-222053000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:222050400-222054000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:222050600-222051800	Enhancers	GM12878-XiMat	blood
23	chr1:222051000-222053000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:222051000-222053800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr1:222051000-222056000	Enhancers	NHDF-Ad	bronchial
26	chr1:222051200-222053000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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