Variant report

Variant	rs10779511
Chromosome Location	chr1:209842279-209842280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11576775	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11577968	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11578613	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11580294	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1815548	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3817870	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4844486	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56948998	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58635984	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6540546	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73087477	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs846912	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs864028	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs932374	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209828400-209844000	Weak transcription	Left Ventricle	heart
2	chr1:209829800-209842800	Weak transcription	Psoas Muscle	Psoas
3	chr1:209831400-209846200	Weak transcription	Right Ventricle	heart
4	chr1:209832400-209846600	Weak transcription	Right Atrium	heart
5	chr1:209833800-209843600	Weak transcription	NHEK	skin
6	chr1:209840200-209842600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:209841000-209843000	Enhancers	K562	blood
8	chr1:209841400-209842800	Weak transcription	Hela-S3	cervix
9	chr1:209841400-209843400	Weak transcription	Fetal Heart	heart
10	chr1:209841400-209843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:209841600-209842600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr1:209841600-209843400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:209841600-209843400	Weak transcription	Adipose Nuclei	Adipose
14	chr1:209841600-209843400	Weak transcription	HMEC	breast
15	chr1:209841600-209843800	Weak transcription	Liver	Liver
16	chr1:209841600-209843800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:209841600-209844000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:209841600-209844200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:209841600-209846200	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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