Variant report

Variant	rs10779562
Chromosome Location	chr1:211786410-211786411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:211785288..211788085-chr1:212796796..212799464,2	K562	blood:
2	chr1:211749761..211758387-chr1:211774495..211787871,24	K562	blood:
3	chr1:211782443..211790536-chr1:211800686..211806134,8	K562	blood:
4	chr1:211773176..211775431-chr1:211786390..211787967,2	K562	blood:
5	chr1:211784999..211786549-chr1:211812192..211813764,2	K562	blood:
6	chr1:211777656..211789537-chr1:211792028..211798981,15	K562	blood:
7	chr1:210546260..210548360-chr1:211786384..211787956,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRAF5-11	chr1:211786249-211786413	NONHSAT009302

No data

Variant related genes	Relation type
ENSG00000162771	Chromatin interaction
ENSG00000170385	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000261314	Chromatin interaction
ENSG00000227764	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10863918	0.92[EUR][1000 genomes]
rs6667179	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7525247	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7546959	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211777000-211786600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:211781600-211787000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:211781800-211792000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:211782000-211786600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:211782000-211786600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:211782200-211787400	Weak transcription	Small Intestine	intestine
7	chr1:211782800-211787400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:211783800-211786600	Weak transcription	Gastric	stomach
9	chr1:211784000-211787000	Enhancers	Colon Smooth Muscle	Colon
10	chr1:211784000-211787800	Enhancers	Fetal Muscle Leg	muscle
11	chr1:211784000-211788400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:211784200-211787000	Enhancers	Spleen	Spleen
13	chr1:211784200-211789200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr1:211784400-211787400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:211784400-211787400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:211784400-211788400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:211784600-211789400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:211784800-211786600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:211784800-211786600	Weak transcription	Fetal Heart	heart
20	chr1:211784800-211788400	Enhancers	Placenta	Placenta
21	chr1:211785000-211786600	Weak transcription	Fetal Brain Male	brain
22	chr1:211785000-211789400	Weak transcription	Liver	Liver
23	chr1:211785000-211789800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:211785200-211786600	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr1:211785200-211786600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:211785200-211788800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:211785200-211789400	Weak transcription	Fetal Lung	lung
28	chr1:211785200-211790000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr1:211785400-211786600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:211785400-211786600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:211785400-211787800	Enhancers	HepG2	liver
32	chr1:211785400-211788800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:211785400-211789600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:211785400-211789600	Weak transcription	Brain Hippocampus Middle	brain
35	chr1:211785600-211786600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr1:211785600-211788400	Enhancers	Duodenum Mucosa	Duodenum
37	chr1:211785600-211794800	Weak transcription	Brain Anterior Caudate	brain
38	chr1:211786000-211787000	Enhancers	Left Ventricle	heart
39	chr1:211786000-211787200	Enhancers	Right Ventricle	heart
40	chr1:211786000-211787600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr1:211786000-211787600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:211786000-211787600	Enhancers	Adipose Nuclei	Adipose
43	chr1:211786000-211788200	Enhancers	Colonic Mucosa	Colon
44	chr1:211786200-211786600	Enhancers	Brain Substantia Nigra	brain
45	chr1:211786200-211786800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:211786200-211786800	Enhancers	Aorta	Aorta
47	chr1:211786200-211786800	Enhancers	Esophagus	oesophagus
48	chr1:211786200-211786800	Flanking Active TSS	Hela-S3	cervix
49	chr1:211786200-211786800	Enhancers	HSMMtube	muscle
50	chr1:211786200-211786800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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