Variant report
Variant | rs10779581 |
---|---|
Chromosome Location | chr1:212695787-212695788 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:212694260..212697495-chr1:212698581..212701408,3 | K562 | blood: | |
2 | chr1:212694583..212696662-chr1:212790397..212791972,2 | K562 | blood: | |
3 | chr1:212694260..212696447-chr1:212698581..212701074,2 | K562 | blood: | |
4 | chr1:212693469..212698326-chr1:212780129..212784311,8 | K562 | blood: | |
5 | chr1:212693408..212696360-chr1:212780129..212783501,6 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000162772 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10863978 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10863979 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10863980 | 0.94[CHB][hapmap];0.81[JPT][hapmap] |
rs1105899 | 0.80[JPT][hapmap] |
rs11119940 | 1.00[ASW][hapmap] |
rs11119941 | 1.00[ASW][hapmap] |
rs11119951 | 1.00[GIH][hapmap] |
rs11119953 | 1.00[GIH][hapmap] |
rs11119956 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11119957 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11119962 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11119963 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11119965 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11119970 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11119971 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11119972 | 0.95[CHB][hapmap] |
rs11119973 | 1.00[ASW][hapmap];0.95[CHB][hapmap] |
rs11119974 | 0.90[CHB][hapmap] |
rs11119975 | 0.85[CHB][hapmap] |
rs12038766 | 0.90[CHB][hapmap] |
rs12041940 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12410743 | 0.91[ASN][1000 genomes] |
rs12568048 | 1.00[GIH][hapmap] |
rs12729140 | 0.90[CHB][hapmap] |
rs3806460 | 0.90[CHB][hapmap] |
rs4347269 | 0.91[ASN][1000 genomes] |
rs4951447 | 1.00[ASW][hapmap] |
rs4951448 | 1.00[ASW][hapmap] |
rs4951453 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4951606 | 0.89[CHB][hapmap] |
rs4951609 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4951611 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4951613 | 0.90[CHB][hapmap] |
rs502502 | 0.84[JPT][hapmap] |
rs510189 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs606996 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs616408 | 0.85[JPT][hapmap] |
rs6674072 | 0.86[JPT][hapmap] |
rs678640 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs72649991 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs72649993 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7553505 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs791561 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv549139 | chr1:212332294-212876902 | Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 114 gene(s) | inside rSNPs | diseases |
2 | nsv1013110 | chr1:212555764-212948092 | Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 81 gene(s) | inside rSNPs | diseases |
3 | nsv535287 | chr1:212555764-212948092 | Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 81 gene(s) | inside rSNPs | diseases |
4 | nsv873162 | chr1:212610755-212716033 | Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
5 | nsv527863 | chr1:212617423-212700618 | Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
6 | esv2757770 | chr1:212648143-212843103 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 77 gene(s) | inside rSNPs | diseases |
7 | esv2758996 | chr1:212648143-212843103 | Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 77 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:212688600-212699400 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
2 | chr1:212689200-212699800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
3 | chr1:212692600-212698400 | Weak transcription | Left Ventricle | heart |
4 | chr1:212692600-212700000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |