Variant report

Variant	rs10780156
Chromosome Location	chr8:1956282-1956283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:1947283..1948870-chr8:1955148..1956732,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10088130	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10098493	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10105508	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11785522	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11990435	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11993699	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11997759	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12676812	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3087819	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4288423	0.81[EUR][1000 genomes]
rs4322044	0.95[EUR][1000 genomes]
rs4357331	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4410948	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4532639	0.85[EUR][1000 genomes]
rs4541975	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62478221	0.88[EUR][1000 genomes]
rs6558569	0.83[EUR][1000 genomes]
rs6558575	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6983226	0.88[EUR][1000 genomes]
rs7018066	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7386983	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7460119	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889704	chr8:1563904-1965389	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv889708	chr8:1581839-1965389	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv889709	chr8:1581839-1965389	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv889714	chr8:1616718-1965389	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv609531	chr8:1717036-1965389	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv889724	chr8:1756800-1965389	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv889731	chr8:1868842-1965389	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv889736	chr8:1892069-1965389	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv889738	chr8:1897249-1965389	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv824473	chr8:1914305-1965389	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv824474	chr8:1915145-1960212	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv824477	chr8:1915145-1965389	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1019578	chr8:1926059-1965389	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	esv1817590	chr8:1947938-1958001	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv518960	chr8:1955283-1959068	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv520178	chr8:1955283-1959336	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1949800-1956800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:1950600-1957200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr8:1950600-1958200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr8:1951600-1958800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:1954200-1957400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr8:1954200-1957400	Strong transcription	Fetal Intestine Small	intestine
7	chr8:1954400-1956400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr8:1954400-1957400	Weak transcription	Primary T cells from cord blood	blood
9	chr8:1954400-1958600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:1954400-1960200	Weak transcription	Fetal Thymus	thymus
11	chr8:1954600-1956400	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:1954600-1956600	Strong transcription	Brain Germinal Matrix	brain
13	chr8:1954600-1958600	Weak transcription	Brain Anterior Caudate	brain
14	chr8:1954800-1956400	Genic enhancers	Fetal Muscle Trunk	muscle
15	chr8:1955000-1956600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:1955000-1956800	Genic enhancers	Fetal Muscle Leg	muscle
17	chr8:1955000-1957000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:1955200-1959200	Weak transcription	Fetal Kidney	kidney
19	chr8:1955400-1956400	Weak transcription	Primary B cells from cord blood	blood
20	chr8:1955600-1958000	Weak transcription	Pancreas	Pancrea
21	chr8:1955600-1959600	Weak transcription	Fetal Intestine Large	intestine
22	chr8:1955600-1960200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr8:1955800-1956600	Enhancers	Lung	lung
24	chr8:1955800-1957000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:1955800-1957000	Enhancers	Spleen	Spleen
26	chr8:1955800-1957400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr8:1956000-1958200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:1956000-1958800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:1956000-1958800	Weak transcription	Brain Angular Gyrus	brain
30	chr8:1956000-1958800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:1956000-1958800	Weak transcription	Brain Substantia Nigra	brain
32	chr8:1956000-1958800	Weak transcription	HSMMtube	muscle
33	chr8:1956000-1959400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:1956000-1959400	Weak transcription	Thymus	Thymus
35	chr8:1956200-1956800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:1956200-1957400	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr8:1956200-1958400	Weak transcription	Brain Hippocampus Middle	brain
38	chr8:1956200-1958600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:1956200-1958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:1956200-1958800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr8:1956200-1958800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr8:1956200-1958800	Weak transcription	HSMM	muscle
43	chr8:1956200-1959800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:1956200-1960200	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links