Variant report

Variant	rs10780603
Chromosome Location	chr9:86058646-86058647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10115207	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10119045	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10481736	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10780602	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10780604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10868010	0.87[ASN][1000 genomes]
rs11140067	0.81[ASN][1000 genomes]
rs11140088	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2375919	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849868	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3860917	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3860924	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4097498	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4877761	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4877762	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4877763	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6559723	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7022758	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7023140	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7023259	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7023415	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7027592	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7037923	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7039266	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86047400-86059000	Weak transcription	Placenta	Placenta
2	chr9:86047600-86059200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:86047600-86062400	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:86053000-86065400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:86055800-86059000	Weak transcription	Psoas Muscle	Psoas
6	chr9:86056000-86059000	Weak transcription	Gastric	stomach
7	chr9:86056000-86059000	Weak transcription	Right Atrium	heart
8	chr9:86056000-86059200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:86056200-86062200	Weak transcription	Spleen	Spleen
11	chr9:86056200-86069200	Weak transcription	Esophagus	oesophagus
12	chr9:86056800-86058800	Weak transcription	NHDF-Ad	bronchial
13	chr9:86056800-86059000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:86056800-86059000	Weak transcription	Aorta	Aorta
15	chr9:86056800-86059000	Weak transcription	Fetal Stomach	stomach
16	chr9:86056800-86059000	Weak transcription	Left Ventricle	heart
17	chr9:86056800-86059000	Weak transcription	Pancreas	Pancrea
18	chr9:86056800-86059000	Weak transcription	Right Ventricle	heart
19	chr9:86056800-86059200	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:86056800-86060600	Weak transcription	Fetal Kidney	kidney
21	chr9:86056800-86063800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:86057000-86059000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:86057000-86059000	Weak transcription	Adipose Nuclei	Adipose
24	chr9:86057000-86059000	Weak transcription	Hela-S3	cervix
25	chr9:86057000-86059200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:86057000-86060600	Weak transcription	HepG2	liver
27	chr9:86057000-86063600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:86057000-86066400	Weak transcription	A549	lung
29	chr9:86057200-86059000	Weak transcription	Ovary	ovary

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