Variant report

Variant	rs10780682
Chromosome Location	chr9:72472831-72472832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72466770..72470991-chr9:72472018..72475663,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAMDC2-3	chr9:72472825-72472893	NONHSAT131791

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12235696	0.91[CHB][hapmap];0.85[AMR][1000 genomes]
rs2309580	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:72465000-72473200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:72467600-72474600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:72468000-72473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:72468000-72474400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:72470400-72473000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:72471000-72481800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:72471400-72473200	Enhancers	NHDF-Ad	bronchial
9	chr9:72471600-72473400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:72471600-72473600	Enhancers	HMEC	breast
11	chr9:72471600-72474000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:72471600-72474000	Enhancers	HUVEC	blood vessel
13	chr9:72472000-72474600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:72472200-72473800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:72472400-72473000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:72472400-72473400	Enhancers	Liver	Liver
17	chr9:72472600-72473400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:72472600-72474800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr9:72472600-72476000	Weak transcription	NH-A	brain
20	chr9:72472800-72474400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:72472800-72474600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:72472800-72476200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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