Variant report

Variant	rs10780949
Chromosome Location	chr9:73190432-73190433
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73024853..73027503-chr9:73188981..73191128,2	MCF-7	breast:
2	chr9:73033892..73035832-chr9:73188677..73192250,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10780951	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10868854	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
2	chr9:73187000-73192600	Weak transcription	Fetal Intestine Small	intestine
3	chr9:73187000-73193600	Weak transcription	Fetal Intestine Large	intestine
4	chr9:73188200-73192600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:73188400-73190800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:73188400-73193200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:73188400-73195600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:73188600-73190600	Enhancers	Osteobl	bone
9	chr9:73188800-73193000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:73188800-73193000	Enhancers	NHDF-Ad	bronchial
11	chr9:73189000-73192000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:73189000-73193400	Weak transcription	Pancreas	Pancrea
13	chr9:73189200-73191800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:73189200-73194000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:73189400-73191800	Weak transcription	Adipose Nuclei	Adipose
16	chr9:73189400-73192000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:73189400-73192000	Weak transcription	Psoas Muscle	Psoas
18	chr9:73189400-73192200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:73189600-73191800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:73189600-73191800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:73189600-73192000	Weak transcription	NH-A	brain
22	chr9:73189600-73213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:73189800-73191800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:73189800-73191800	Weak transcription	Fetal Lung	lung
25	chr9:73189800-73191800	Weak transcription	NHLF	lung
26	chr9:73189800-73192200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:73189800-73192200	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:73189800-73192200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:73189800-73192200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr9:73190000-73192000	Weak transcription	HSMMtube	muscle
31	chr9:73190200-73190600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:73190200-73191800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr9:73190200-73192000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:73190200-73192000	Weak transcription	Colon Smooth Muscle	Colon
35	chr9:73190200-73192200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:73190400-73191000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:73190400-73191000	Enhancers	Right Atrium	heart
38	chr9:73190400-73195600	Weak transcription	Brain Substantia Nigra	brain

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