Variant report

Variant	rs10785025
Chromosome Location	chr12:73775098-73775099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10748229	0.91[EUR][1000 genomes]
rs10748230	0.91[EUR][1000 genomes]
rs10748231	0.90[EUR][1000 genomes]
rs10748232	0.91[EUR][1000 genomes]
rs10785026	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10785027	0.83[EUR][1000 genomes]
rs10785030	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10879621	0.86[EUR][1000 genomes]
rs11179674	0.85[EUR][1000 genomes]
rs1520550	0.83[EUR][1000 genomes]
rs1520552	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1520565	0.92[EUR][1000 genomes]
rs1520568	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1851041	0.92[EUR][1000 genomes]
rs1851042	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1915285	0.91[EUR][1000 genomes]
rs1915286	0.91[EUR][1000 genomes]
rs2139680	0.83[EUR][1000 genomes]
rs34249066	0.88[EUR][1000 genomes]
rs4760887	0.92[EUR][1000 genomes]
rs4882911	0.88[EUR][1000 genomes]
rs6582160	0.88[EUR][1000 genomes]
rs6582165	0.87[EUR][1000 genomes]
rs7295470	0.84[EUR][1000 genomes]
rs7297256	0.86[EUR][1000 genomes]
rs7298973	0.91[EUR][1000 genomes]
rs7301536	0.90[EUR][1000 genomes]
rs7306348	0.87[EUR][1000 genomes]
rs7310312	0.92[EUR][1000 genomes]
rs7485858	0.83[EUR][1000 genomes]
rs7489254	0.92[EUR][1000 genomes]
rs7953263	0.87[EUR][1000 genomes]
rs7955005	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7963550	0.92[EUR][1000 genomes]
rs7964705	0.82[EUR][1000 genomes]
rs7975033	0.81[EUR][1000 genomes]
rs7977492	0.88[EUR][1000 genomes]
rs7978802	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs952523	0.90[EUR][1000 genomes]
rs952524	0.90[EUR][1000 genomes]
rs965542	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs988541	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752680	chr12:73278611-73778216	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv899274	chr12:73510254-73875790	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2754130	chr12:73573245-73778216	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832456	chr12:73620419-73775946	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv899277	chr12:73773886-73875790	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:73771800-73778600	Weak transcription	Pancreas	Pancrea
2	chr12:73774800-73777200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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