Variant report

Variant	rs10786219
Chromosome Location	chr10:97302787-97302788
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97301380..97303820-chr10:97311084..97312595,2	MCF-7	breast:
2	chr10:97292035..97293722-chr10:97302086..97303727,2	K562	blood:
3	chr10:97302505..97305579-chr10:97311139..97314608,3	K562	blood:
4	chr10:97298258..97302790-chr10:97302901..97306757,8	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10882613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11596541	0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10786219	NOC3L	cis	cerebellum	SCAN
rs10786219	IDE	cis	cerebellum	SCAN
rs10786219	ZFYVE27	cis	cerebellum	SCAN
rs10786219	MARCH5	cis	parietal	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
2	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
3	chr10:97289400-97303800	Weak transcription	HSMM	muscle
4	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
5	chr10:97293200-97302800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:97293400-97305400	Enhancers	Right Atrium	heart
7	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
8	chr10:97295000-97305200	Enhancers	Stomach Mucosa	stomach
9	chr10:97296200-97306400	Enhancers	Liver	Liver
10	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr10:97296600-97302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
13	chr10:97297200-97302800	Weak transcription	Fetal Brain Male	brain
14	chr10:97298200-97305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:97298200-97308200	Enhancers	Fetal Muscle Leg	muscle
16	chr10:97298400-97305200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr10:97298600-97305000	Enhancers	Brain Anterior Caudate	brain
18	chr10:97298800-97305800	Enhancers	Brain Hippocampus Middle	brain
19	chr10:97299000-97303800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:97299000-97307200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:97299200-97303000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr10:97299200-97303600	Enhancers	Brain Substantia Nigra	brain
23	chr10:97299200-97303600	Enhancers	K562	blood
24	chr10:97299400-97304200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:97299400-97305200	Enhancers	Right Ventricle	heart
26	chr10:97299800-97302800	Enhancers	Small Intestine	intestine
27	chr10:97300200-97303400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:97300400-97305000	Enhancers	Spleen	Spleen
29	chr10:97300400-97308800	Enhancers	Psoas Muscle	Psoas
30	chr10:97300600-97302800	Enhancers	Fetal Stomach	stomach
31	chr10:97300600-97304200	Enhancers	Gastric	stomach
32	chr10:97300600-97305200	Enhancers	Lung	lung
33	chr10:97300800-97303000	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr10:97300800-97303800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr10:97300800-97305200	Enhancers	Pancreas	Pancrea
36	chr10:97300800-97307200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr10:97301000-97303200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:97301000-97303600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:97301000-97303800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:97301000-97303800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:97301000-97315200	Enhancers	HepG2	liver
42	chr10:97301200-97302800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:97301200-97303000	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr10:97301400-97302800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr10:97301400-97303000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr10:97301400-97304400	Flanking Active TSS	Fetal Heart	heart
47	chr10:97301400-97305800	Enhancers	Brain Angular Gyrus	brain
48	chr10:97301400-97306600	Enhancers	Brain Cingulate Gyrus	brain
49	chr10:97301800-97303200	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr10:97301800-97303400	Enhancers	Aorta	Aorta

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