Variant report

Variant	rs10786222
Chromosome Location	chr10:97317158-97317159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97290965..97293136-chr10:97317143..97318856,2	K562	blood:
2	chr10:97315253..97317391-chr10:97320414..97322052,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10786221	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10882619	0.87[ASW][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs1536444	0.80[TSI][hapmap]
rs1536445	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7069574	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10786222	EXOSC1	cis	cerebellum	SCAN
rs10786222	ATP6V1G1	trans	parietal	SCAN
rs10786222	CYP2C8	cis	parietal	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97305200-97318600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:97305200-97319000	Weak transcription	HSMM	muscle
3	chr10:97308000-97318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:97310400-97318400	Weak transcription	Fetal Kidney	kidney
5	chr10:97310800-97317800	Weak transcription	Pancreas	Pancrea
6	chr10:97311000-97318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97311400-97317200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:97311400-97318400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:97311600-97317400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr10:97313000-97317200	Weak transcription	Spleen	Spleen
11	chr10:97313000-97318600	Weak transcription	Stomach Mucosa	stomach
12	chr10:97313400-97317800	Weak transcription	Lung	lung
13	chr10:97313400-97318200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:97313800-97317200	Weak transcription	Fetal Intestine Small	intestine
15	chr10:97313800-97318400	Weak transcription	Placenta	Placenta
16	chr10:97314000-97317600	Weak transcription	Fetal Stomach	stomach
17	chr10:97314800-97318200	Enhancers	Left Ventricle	heart
18	chr10:97315200-97321600	Active TSS	Aorta	Aorta
19	chr10:97315600-97319200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:97315800-97317200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:97315800-97317600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:97316000-97317200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:97316000-97317800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:97316000-97318200	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:97316400-97317400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:97316600-97317400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:97316600-97318400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr10:97316600-97318400	Enhancers	Fetal Heart	heart
29	chr10:97316800-97317200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:97316800-97317200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr10:97316800-97317200	Enhancers	Right Ventricle	heart
32	chr10:97316800-97317400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:97316800-97317400	Enhancers	H9 Cell Line	embryonic stem cell
34	chr10:97316800-97317400	Enhancers	Liver	Liver
35	chr10:97316800-97317400	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr10:97316800-97317400	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr10:97316800-97317400	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr10:97316800-97317400	Enhancers	Ovary	ovary
39	chr10:97316800-97317400	Enhancers	K562	blood
40	chr10:97316800-97318000	Enhancers	Right Atrium	heart
41	chr10:97316800-97318200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:97316800-97318400	Enhancers	Fetal Brain Male	brain
43	chr10:97316800-97318400	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
44	chr10:97316800-97318400	Enhancers	HepG2	liver
45	chr10:97316800-97318600	Enhancers	Brain Germinal Matrix	brain
46	chr10:97316800-97318800	Enhancers	H1 Cell Line	embryonic stem cell
47	chr10:97316800-97319000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:97316800-97319200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:97316800-97319200	Enhancers	Gastric	stomach
50	chr10:97316800-97321600	Active TSS	Duodenum Smooth Muscle	Duodenum

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