Variant report

Variant	rs10786225
Chromosome Location	chr10:97318284-97318285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97290965..97293136-chr10:97317143..97318856,2	K562	blood:
2	chr10:97309672..97311515-chr10:97317695..97319479,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10736090	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10786216	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1409711	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61761204	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97305200-97318600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:97305200-97319000	Weak transcription	HSMM	muscle
3	chr10:97308000-97318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:97310400-97318400	Weak transcription	Fetal Kidney	kidney
5	chr10:97311000-97318600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97311400-97318400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:97313000-97318600	Weak transcription	Stomach Mucosa	stomach
8	chr10:97313800-97318400	Weak transcription	Placenta	Placenta
9	chr10:97315200-97321600	Active TSS	Aorta	Aorta
10	chr10:97315600-97319200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:97316600-97318400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:97316600-97318400	Enhancers	Fetal Heart	heart
13	chr10:97316800-97318400	Enhancers	Fetal Brain Male	brain
14	chr10:97316800-97318400	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
15	chr10:97316800-97318400	Enhancers	HepG2	liver
16	chr10:97316800-97318600	Enhancers	Brain Germinal Matrix	brain
17	chr10:97316800-97318800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr10:97316800-97319000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:97316800-97319200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:97316800-97319200	Enhancers	Gastric	stomach
21	chr10:97316800-97321600	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr10:97317000-97318600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr10:97317000-97318600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:97317000-97318600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:97317000-97319000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr10:97317000-97319200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:97317000-97321600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:97317200-97318400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:97317200-97318400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:97317200-97318400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr10:97317200-97319400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:97317200-97321600	Active TSS	Right Ventricle	heart
33	chr10:97317400-97318400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr10:97317400-97318400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:97317400-97318400	Weak transcription	Psoas Muscle	Psoas
36	chr10:97317400-97318400	Weak transcription	K562	blood
37	chr10:97317400-97318800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr10:97317400-97319000	Enhancers	Fetal Muscle Leg	muscle
39	chr10:97317400-97319200	Weak transcription	Ovary	ovary
40	chr10:97317600-97319200	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr10:97317600-97319400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:97317600-97320400	Active TSS	Fetal Stomach	stomach
43	chr10:97317800-97318400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:97317800-97318400	Enhancers	Liver	Liver
45	chr10:97317800-97318600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr10:97317800-97318600	Enhancers	Lung	lung
47	chr10:97317800-97321600	Active TSS	Colon Smooth Muscle	Colon
48	chr10:97318000-97318400	Enhancers	Fetal Brain Female	brain
49	chr10:97318000-97318600	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr10:97318000-97318600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links