Variant report

Variant	rs10786232
Chromosome Location	chr10:97470167-97470168
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10159941	0.85[ASN][1000 genomes]
rs10748639	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10748640	0.85[ASN][1000 genomes]
rs10748641	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10786230	0.85[ASN][1000 genomes]
rs10882653	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1113881	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1933166	0.80[ASN][1000 genomes]
rs1933171	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1953710	0.81[ASN][1000 genomes]
rs2225894	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3763705	0.80[ASN][1000 genomes]
rs4457685	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4917700	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4917701	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4918958	0.85[ASN][1000 genomes]
rs4918964	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6584014	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6584015	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7073723	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7073936	0.81[ASN][1000 genomes]
rs7073973	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7079911	0.82[ASN][1000 genomes]
rs7905653	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7919773	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs951418	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10786232	TCTN3	Cis_1M	lymphoblastoid	RTeQTL
rs10786232	OPALIN	cis	temporal cortex	BrainEAC

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97458800-97481400	Weak transcription	Primary B cells from cord blood	blood
2	chr10:97469200-97471600	Enhancers	Placenta	Placenta
3	chr10:97469400-97475600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:97469800-97470400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97470000-97476200	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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